| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1408 |
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| Symbol | |
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| ID | 5712584 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1461184 |
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| End bp | 1463877 |
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| Gene Length | 2694 bp |
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| Protein Length | 897 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641267320 |
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| Product | integral membrane sensor signal transduction histidine kinase |
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| Protein accession | YP_001532751 |
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| Protein GI | 159043957 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG0591] Na+/proline symporter
[COG5002] Signal transduction histidine kinase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.263667 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGTCGC TCAACCTGCT TGTCGCGATC TCGCTGGCTT ATGTGGCGTT GCTCTTCGGG
GTGGCTTTCG TGGCCGAACG GCGCGCGGCG CGGGGCAAGA CCGGGTGGCT GCGCGCGCCG
ATGATCTACA CGCTGAGCCT GTCGGTCTAT TGCACGGCCT GGACGTTCTA TGGCGCGGTG
GGCTACGCGG CGCGGTCGGG GCTGGAATTC GTGACGATCT ATCTCGGTCC GACGCTGGTC
TTCATCGGCT GGTGGTGGCT GCTGCGCAAG CTGGTGCGGA TCGGCCGGGC GCAGCGGGTC
ACGTCGATCG CGGACCTGAT CTCGTCGCGC TATGGCAAGT CCAACGGGCT GGCGGTGCTG
GTCACCGGGA TGGCGGTGAT CGCCTCGGCG CCGTATATCG CGCTGCAATT GCAGTCGGTC
TCGCTGTCGC TGGCGGTGTT CGATGCGGAA AGCGCGGAGG TCATGGCCAA TCCCACCGGG
GCGGTGATGG ACGGGTTGTG GGTGGCCATC GGGCTTGCGA TCTTCACGGT GCTGTTCGGG
ACGCGCAACC TCGATGCCAA CGAGCGGCAC CATGGGGTGG TCATGGCCAT CGCGGTCGAA
GCGGTGATGA AGCTCGTGGC CCTGCTGGCG GTGGGGGTGT TCGTGGTCTG GGGGCTGGCC
GACGGGGTCG GGGATATCCT GACGCGGCTC GACGCCTCGC CGGTCTCGGC CTGGCAGGTC
GAGGGCGGGC GCTGGGTCGG GTTGATCTTC GTCTCGGCGG CGGCGGTGAT CTGCCTGCCG
CGGATGTTCC AGGTGATGGT GGTCGAGAAT GCCGACGAGT CCCACCTGAG CACGGCAAGC
TGGGCCTTTC CCGCCTACCT GATGCTGATG AGCCTGTTCG TGATCCCGAT CGCGGTGGTG
GGGCTGGACC TGATGCCCGC GGGGGCCAAC CCGGACCTGT TCGTGCTGAC CCTGCCGCTG
TCGCAGGATC AGAACATGCT GGCGGCGCTG GCGTTTCTGG GCGGGTTTTC CTCGGCGACC
TCCATGGTGA TCGTGGCGGC CATCGCGCTG TCGACCATGG TGTCGAACCA CATCATCATG
CCGGTCTGGC TGAGCCTGCA GGATGGCGGC AAGGCCAGCG TGTCGGGCGA TGTGCGGCGC
GCGATGCTGT TCTCGCGGCG GATCTCGATC GCGGCGGTGC TGGGCATGGG CTATGCCTAT
TTCGCCCTGT CCGAAGGCGG CGAGGCGCTG GCGGCGATCG GGTTGATCTC GTTCGTGGGC
GCGGCGCAGG TGCTGCCGGC GCTGCTCGGG GGGATTTTCT GGCGCGGGGC GACCCGGCGC
GGCGCGGTCG CGGGCCTGAT CGCGGGGTTC GCGGTCTGGG CCTACACGTT CTACATGCCC
AGCCTCGCGG TGCCGGGATC GGTGCTGGCC GATATCGTGC GGGACGGGCC GCTGGGCATG
GGGTTCCTGC GGCCGCACGG GCTGTTCGGG CTGACGGGGC TCGACCCGCT GGTGCATGCG
CTGCTGTGGT CGATGGTGCT GAATGCGGGG CTGTTCCTGG GGGTGTCCCT GCTGTCCTTC
CCGTCGCCGA TGGAGCGGTT GCAGGGCGCG CAGTTCGTCA ACGTGTTCGA GCATTCGACC
ACCCCGCGCA GCTGGGCCGG GGGGCGGGCG GAGGCCGAGG ATCTGCTGAT CATGGCGCAG
CGGATCCTGG GCCCGGACGA GGCCCATAAC GTCTTCAGCG CAGCCGCGCG CGCCCAGGGC
AAGACCGGGT ACCTGCCGGA CACGACGCCT GAATTCCTGA TGGACCTTGA GCGGGAGCTG
GCCGGATCGG TGGGCGCGGC CACGGCCCAT GCGATGATCG CGCAGATCAA CGGCGGGGCG
TCGGTGTCGG TGCGCGAATT GATGGCGGTG GCCGACGAGA CCGCGCAGAT GATGGAATAT
TCCAGCCAGC TGGAGGCCAA GTCGCGGGAG CTGGAGGCGA CGGCGACCAA GCTGCGCGAG
GCCAACGAGA AGCTCACCGA GCTGTCGGTG CAGAAGGACG CCTTCCTGAG CCAGATCAGC
CACGAGCTGC GCACGCCGAT GACCTCGATC CGGTCGTTTT CCGAGATTCT GATGCAGGGG
CGGCTGGAGC CGGAGGTGCG GCGGCGCTAT TCCTCGATCA TCCATGACGA GAGCCTGCGG
CTGACCCGGC TGCTCGACGA TCTGCTGGAT CTCAGCGTGC TGGAGAACGG GCAGGTGGTG
CTGAACCCGC AGCAGGAGCG GCTGGGCGAC CTGATCGACC GGGCGATCTC GGCCTCGGCG
GTGGGACATG CGCGCAGCCT GAGGGTGCTG CGCGATCCGG GGCAGGAAGA TCACGTGATC
TACACCGATA CCGACCGGCT GGTGCAGGTG TTCATCAACA TCATCGCCAA CACGATCAAG
TATTGCGACG CGACCGATCC GGAACTGCGG ATCGAGGTGC GCGCGGGCGA GGGGATGCTG
CAGCTCGATT TCATCGACAA CGGCTCGGGC ATCCCGGCGC GCAGCCATGG CCTGATCTTC
GAGAAATTCG CGCGGCTGGA CGACCAGACC AAGGCGGGCG GCGCGGGGCT GGGTCTGGCG
ATCTGCCGCG AGGTGATGAG CAAGCTGGGC GGATCGATCG ATTACCTGCG CGGGCAGTCG
GGCGCGGCGT TCCGGGTCAG CCTGCCGATG GAGATTTCCC GCGCCGTGGC CTGA
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| Protein sequence | MLSLNLLVAI SLAYVALLFG VAFVAERRAA RGKTGWLRAP MIYTLSLSVY CTAWTFYGAV
GYAARSGLEF VTIYLGPTLV FIGWWWLLRK LVRIGRAQRV TSIADLISSR YGKSNGLAVL
VTGMAVIASA PYIALQLQSV SLSLAVFDAE SAEVMANPTG AVMDGLWVAI GLAIFTVLFG
TRNLDANERH HGVVMAIAVE AVMKLVALLA VGVFVVWGLA DGVGDILTRL DASPVSAWQV
EGGRWVGLIF VSAAAVICLP RMFQVMVVEN ADESHLSTAS WAFPAYLMLM SLFVIPIAVV
GLDLMPAGAN PDLFVLTLPL SQDQNMLAAL AFLGGFSSAT SMVIVAAIAL STMVSNHIIM
PVWLSLQDGG KASVSGDVRR AMLFSRRISI AAVLGMGYAY FALSEGGEAL AAIGLISFVG
AAQVLPALLG GIFWRGATRR GAVAGLIAGF AVWAYTFYMP SLAVPGSVLA DIVRDGPLGM
GFLRPHGLFG LTGLDPLVHA LLWSMVLNAG LFLGVSLLSF PSPMERLQGA QFVNVFEHST
TPRSWAGGRA EAEDLLIMAQ RILGPDEAHN VFSAAARAQG KTGYLPDTTP EFLMDLEREL
AGSVGAATAH AMIAQINGGA SVSVRELMAV ADETAQMMEY SSQLEAKSRE LEATATKLRE
ANEKLTELSV QKDAFLSQIS HELRTPMTSI RSFSEILMQG RLEPEVRRRY SSIIHDESLR
LTRLLDDLLD LSVLENGQVV LNPQQERLGD LIDRAISASA VGHARSLRVL RDPGQEDHVI
YTDTDRLVQV FINIIANTIK YCDATDPELR IEVRAGEGML QLDFIDNGSG IPARSHGLIF
EKFARLDDQT KAGGAGLGLA ICREVMSKLG GSIDYLRGQS GAAFRVSLPM EISRAVA
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