| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1278 |
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| Symbol | |
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| ID | 5711836 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1327313 |
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| End bp | 1328482 |
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| Gene Length | 1170 bp |
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| Protein Length | 389 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641267190 |
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| Product | phytanoyl-CoA dioxygenase |
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| Protein accession | YP_001532621 |
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| Protein GI | 159043827 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG5285] Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.0445475 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.279697 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCACGG CGCAAGGCTA TTTCGAACCC GGTGCCTGCG ACCTGCCTGC CTTCGAGGCG
CTGATCTCGC AGCAGCTCGA TCCGCAACGC GTGCCGCATG CGGCCGAGAT CGCATCGGGC
ATCCCGGTTT ACGACATGAC CGTGCGGTCG GGGGATTTGG CGGATGGTCT CGCGCGCCGT
GCTCTGATGG CGGAATGGGC CTGGGTGCTT GGCGCGGGGC CGGGGGTCTT CGTGCTGCGC
CGCGCGCTGA CGGATCACGC CATACTCGAC GCGGTCACGG CCCGCTATCT CGACATCATC
GCCGCGGAGA AATCCGCAGG CGGCCCCGGT GCGGACCATT TCGCCGCCGC AGGGGCCAAT
GACCGGATCT GGAACAGCCT TGAGAAGCTC TGCCGCGCCG ATCCCGAGCT CTTCGCGCTC
TATTTCGGCA CCCCGGCTCT GACCGCCGCG GCCGAGGCGT GGCTGGGCCC CGGTTTCCAG
ATGACCGCGC AGATCAACCT CGTGCACCCC GGCGGGGCCG CGCAGACGGG GCACCGCGAC
TACCATCTCG GGTTCCAGAG CGCGGACCAG GCGGCCCGGT ACCCCGCCCA TGTCCATGCC
CTGTCCCCGG CGCTGACCCT GCAGGGGGGC ATCGCCCATT GCGACATGCC CGTGGAGAGC
GGCCCGACCA AGCTCTTGCC CTGGTCGCAG CAGTTCCCGA CCGGCTATCT CGCCTTCCAT
GACCCGGCCT TTGGCGAGGT GTTCGAGCGC GCCCATGTGC AGCTGCCGCT CGCCAAGGGC
GAAGCGCTGT TCTTCAACCC GGCGCTCTTT CATGCGGCCG GGGCGAACCG CAGCGCGGAT
ATCCACCGCA TGGTCAACCT GCTGCAAGTC TCGTCCCCCT TCGGTCGCGC GATGGAGGCG
CTGGATCGCC CCGCCATGTG CCGCGCGCTC TATCCCGTGT TGCAACGTCT GGCGGCCGAG
GAACGCCTGG GGTCCGCAGC CCTTTCCGCG GTCATCGCCT GCGCCGCCGA AGGCTACGCC
TTTCCCACAA ATCTCGACAC CGACCCGCCG AGCGGCAGTC TCGCCCCGGA AACCCAGGCC
GAGTTGATGC AGCGCGCACT GGACGCGGGG CTGAGCCCGG CTGCGTTCGA GGCGGCGCTG
GACGCCCAGG CCGCGCGCCG CACCCCGTGA
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| Protein sequence | MTTAQGYFEP GACDLPAFEA LISQQLDPQR VPHAAEIASG IPVYDMTVRS GDLADGLARR
ALMAEWAWVL GAGPGVFVLR RALTDHAILD AVTARYLDII AAEKSAGGPG ADHFAAAGAN
DRIWNSLEKL CRADPELFAL YFGTPALTAA AEAWLGPGFQ MTAQINLVHP GGAAQTGHRD
YHLGFQSADQ AARYPAHVHA LSPALTLQGG IAHCDMPVES GPTKLLPWSQ QFPTGYLAFH
DPAFGEVFER AHVQLPLAKG EALFFNPALF HAAGANRSAD IHRMVNLLQV SSPFGRAMEA
LDRPAMCRAL YPVLQRLAAE ERLGSAALSA VIACAAEGYA FPTNLDTDPP SGSLAPETQA
ELMQRALDAG LSPAAFEAAL DAQAARRTP
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