| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1263 |
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| Symbol | |
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| ID | 5711821 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1312365 |
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| End bp | 1313612 |
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| Gene Length | 1248 bp |
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| Protein Length | 415 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641267175 |
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| Product | efflux transporter |
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| Protein accession | YP_001532606 |
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| Protein GI | 159043812 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.471028 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.778162 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGAACC TGAATGTTTC CCGGGCCTTG CTGGTTGTCG TTGCCGCAGC GATGACCGGC
CCGGCAGCAG CGCAAGACAC CGCGCGCCCT GCGAAGGTGG TCACGGTCGC GCTGACCGAG
GCGGAGGTCG TCCGCACCTA CCCCGCGATC GTGCTGCCCT CGGACGAGGT GGAGCTGTCG
TTCCGCGTCG GCGGCCCGGT GGTGGAGCTT CCGATCCGCG CTGCGACCTC GGTCGAAACC
GGTGACATGA TCGCCCGCAT CGACCCGCGG GACTTCGAGC GCCAGATCGC CCAACTCGAG
AGCCAACGCG ACCAGTCCGC CGCCCAGCTT GCAGCCCTGC GCACCGGCGC GCGCACCGAA
GAGATTTCCG CGCTGCAGGC CGCCGTCGCC TCGGCGGAGG CACAACTGGC CCAGGCCGAG
GAACAGGCCG CGCGCACCCG GCAACTGGCC GAACGCGGGG TCGCGGCCGC CGCACAGCTG
GACAATGACG AGGCCGCGTT GCGGGTCGCG CAGGCAAACC TGCAGGCGCA GCGGGAACAG
CTTGCCATCG GGCAATCAGG GGGCCGCCCC GAAGATATCG AAGCGGCCGA GGCCGGGCTG
CGCGGGCTGG AAACCCAGAT ACAGATCGCT CGGGACCAGC TCGACGACGC CACCCTGCGC
GCGCCGTTCC CCGGCATTAT CGCCCGGCGC TACATCGACG ACTTCTCGAT CGTGCAGCCG
GGACAGCCCA TTGTCCTGCT CCAGAACCTT CAGGTCGTGC ACCTGACCTT CGATGTCCCG
GGACCGGACG TGACCGCCCT GTCAGCCAAC GGACAGGGCA ACATCCGAAA CGAGGTGACC
TTCGACGCGC TGCCCGGGCG GGTCTTCGAC GCCGAGATCG TCGAGTTCTC GGTTCAGGCG
GATTCGGCGA CACAGACCTA TCGGGGCCGC GTGGCGGTGA CCTCCCCGGA CGAGACGACA
ATCCTGCCGG GCATGGTCGG GCGCGTGATC TCGAGCGCGC CGGGCGGGAC GCCCCGGCTG
ATGGCCCCCC TGACCGCGGT GGCCGCCGCC GCCGACAGCA GCCCCTTCGT CTGGATCGTC
GAGGACGATG ACACCGTGCG CAGCCAACCG GTCACCTTGG GCGAAGCCTC CGGAGAGATG
GTCGAGATCC TCGATGGGCT GGAGTCCGGT ACCACCGTCG TGTCCGCGGG CGTCAACCAC
CTGGTCGAGG GGATGCGCGT GCGTCCCGTG ACCCGGATCG GGGGCTGA
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| Protein sequence | MLNLNVSRAL LVVVAAAMTG PAAAQDTARP AKVVTVALTE AEVVRTYPAI VLPSDEVELS
FRVGGPVVEL PIRAATSVET GDMIARIDPR DFERQIAQLE SQRDQSAAQL AALRTGARTE
EISALQAAVA SAEAQLAQAE EQAARTRQLA ERGVAAAAQL DNDEAALRVA QANLQAQREQ
LAIGQSGGRP EDIEAAEAGL RGLETQIQIA RDQLDDATLR APFPGIIARR YIDDFSIVQP
GQPIVLLQNL QVVHLTFDVP GPDVTALSAN GQGNIRNEVT FDALPGRVFD AEIVEFSVQA
DSATQTYRGR VAVTSPDETT ILPGMVGRVI SSAPGGTPRL MAPLTAVAAA ADSSPFVWIV
EDDDTVRSQP VTLGEASGEM VEILDGLESG TTVVSAGVNH LVEGMRVRPV TRIGG
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