| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1194 |
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| Symbol | |
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| ID | 5711962 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1231911 |
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| End bp | 1234142 |
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| Gene Length | 2232 bp |
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| Protein Length | 743 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641267105 |
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| Product | TRAP transporter |
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| Protein accession | YP_001532537 |
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| Protein GI | 159043743 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
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| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGACC AGACCAAGAC CGCAGACGAT CACCTGATTG CCGAGGGGGT GGACGAAGAA
CCCACCGAAT CCAACCGCCG CCTGTTCGAA GGGCGCAACT TCATCCTGAT CAGCACCTTC
GCCGCGCTCT ACGCGGCCTT CCACATGGCC GCGCTCAACG GGTTGTCGAT CTCGGAATGG
ACCGGGATCG AGGTGCCCTT CCTGCCCACC TTCCCGATGG AGACGTGGAA TTTCCGCATC
GTCCATATCG CGGGGGCCCT GGCGCTCGGC TTCCTGCTCT TTGCCGCGCG CACGGACTTT
CCCGGCCCGG GCAAGGAGAC CCCGCTGCTG GGCTACGTCG CCTACGGGCT GATGGTCCCG
GCCCTTTTCT CGCTCGGCAT GGCGGCCAGC TTCTCGATGG AGATCGCCTC CGGCGTGATG
TGGAACGGCA TCGACGAGGG CATCAAGTTC AACGAAACCT GGCTCTTCGG GCTGCCCCTG
ATCGTGGCGA CCGCGGGCGG CATCGTGCTC AGCTGGTTCC ACAAGCGCGC GCGCAGCGGC
TTTTCCGCCC CCGACCTGGT GCTGGCGATC TGCGGCGTGG CGGTGGCCAC CTATCTCATC
ACCATCTACG GCACGTTGAT GCGCAACTCC ACGGGAACGC CATTCGCGCC TATCGGCATC
TCGATCGCCG CCGTCGCGGG CACCGCGCTG ATCATGGAGC TGACCCGCCG GGTCGCGGGC
ATGGCGCTGA TCGTGATCGC GGGCATCTTC CTGGCCTATG TCTTCGTCGG CCAGTACCTG
CCGGGCTTCC TGAACGCCCC CGCGGTGACA TGGCAGCGCT TCTTCAGCCA GGTCTACACC
GATGCGGGCA TCCTCGGGCC GACCACCGCC GTCAGCTCCA CCTATATCAT CCTCTTCATC
ATCTTCGCGG CCTTCCTGCA GGCCTCGAAG GTCGGTGACT ACTTCGTCAA CTTCGCCTTC
GCCGCCGCCG GGCAGTCGCG CGGCGGTCCG GCCAAGGTGG CAATCTTCGC CTCCGGCCTG
ATGGGCATGA TCAACGGCAC CTCGGCGGGC AACGTGGTGG CCACGGGCTC TCTGACGATC
CCGCTGATGA AGAAGGTCGG CTATCACAAG AAAACCGCCG GCGCGGTGGA GGCCGCCGCC
TCCACCGGTG GGCAGATCAT GCCGCCGATC ATGGGCGCAG GTGCGTTCAT CATGGCCGAG
ATCACCGGCA TTCCCTATAC CGAGATCGCG CTGGCCGCGA TCATACCGGC GATCCTCTAC
TTCGTGTCGG TCTACTTCAT GGTGGATCTC GAAGCCGCCA AGCTCGGCAT GCGCGGCATG
TCCCGCGACG AGTTGCCGAA GTTCAACAAG ATGGTGCGCC AGGTCTACCT CTTCCTGCCA
ATCATCATCC TGATCTATGC GCTCTTCATG GGCTACTCGG TGATCCGCGC GGGCACGCTG
GCCACCGTCG CCGCCGCGGT GGTGTCCTGG TTCACGCCCT TCCGAATGGG GCCGCGGTCC
ATCGCCAAGG CGTTCGAGAT CGCCGGCACC ATGTCGGTGC AGATCATCGC GGTCTGTGCT
TGCGCGGGCA TCATCGTGGG CGTGATTTCC CTGACGGGGG TGGGCGCGCG GTTCTCGGCG
GTCTTGCTTG GCATTGCCGA CACCTCGCAA CTGCTGGCGC TGTTCTTTGC CATGTGCATC
GCGATCCTGT TGGGGATGGG GATGCCCACC ACGGCAGCCT ATGCGGTCGC CGCAAGCGTG
GTCGCCCCGG GCCTCGTGCA GCTGGGCATC CCGCTGCTGA CGGCGCATTT CTTCGTGTTC
TACTTCGCGG TGCTGTCGGC CATCACGCCC CCCGTGGCGC TGGCGAGTTA CGCAGCGGCG
GGGATATCGG GCGCGAACCC GATGGAGACC TCGGTCACCT CGTTCAAGAT CGGGATCGCG
GCCTTCATCG TGCCCTTCAT GTTCTTCTAC AACTCGGCGA TCCTGATGGA CGGCACCTGG
TTCGAGGTGC TGCGCGCCGG GGCCACGGCG GTGGTGGGCG TGTTCTTCCT CAGCTCCGGG
GTGCAGGGCT GGTTCATGGG CGGTCGCGCC GCCTGGTTCC TGCGGGTGGG GCTTGTCTTC
GCCGCGCTGA TGCTGATCGA GGGCGGGATC ATGTCCGACC TGATCGGCGT GGGCACCGCG
GTCGCGATCT TCCTGATCCA GAAGCTCGCC GCGCCCAAGG GCGGCGCCAT CCCGGTCCGC
GGCGCGGACT GA
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| Protein sequence | MTDQTKTADD HLIAEGVDEE PTESNRRLFE GRNFILISTF AALYAAFHMA ALNGLSISEW
TGIEVPFLPT FPMETWNFRI VHIAGALALG FLLFAARTDF PGPGKETPLL GYVAYGLMVP
ALFSLGMAAS FSMEIASGVM WNGIDEGIKF NETWLFGLPL IVATAGGIVL SWFHKRARSG
FSAPDLVLAI CGVAVATYLI TIYGTLMRNS TGTPFAPIGI SIAAVAGTAL IMELTRRVAG
MALIVIAGIF LAYVFVGQYL PGFLNAPAVT WQRFFSQVYT DAGILGPTTA VSSTYIILFI
IFAAFLQASK VGDYFVNFAF AAAGQSRGGP AKVAIFASGL MGMINGTSAG NVVATGSLTI
PLMKKVGYHK KTAGAVEAAA STGGQIMPPI MGAGAFIMAE ITGIPYTEIA LAAIIPAILY
FVSVYFMVDL EAAKLGMRGM SRDELPKFNK MVRQVYLFLP IIILIYALFM GYSVIRAGTL
ATVAAAVVSW FTPFRMGPRS IAKAFEIAGT MSVQIIAVCA CAGIIVGVIS LTGVGARFSA
VLLGIADTSQ LLALFFAMCI AILLGMGMPT TAAYAVAASV VAPGLVQLGI PLLTAHFFVF
YFAVLSAITP PVALASYAAA GISGANPMET SVTSFKIGIA AFIVPFMFFY NSAILMDGTW
FEVLRAGATA VVGVFFLSSG VQGWFMGGRA AWFLRVGLVF AALMLIEGGI MSDLIGVGTA
VAIFLIQKLA APKGGAIPVR GAD
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