| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1123 |
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| Symbol | |
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| ID | 5711091 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1148895 |
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| End bp | 1149425 |
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| Gene Length | 531 bp |
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| Protein Length | 176 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641267034 |
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| Product | tetratricopeptide TPR_2 repeat protein |
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| Protein accession | YP_001532466 |
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| Protein GI | 159043672 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.0172242 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGCGT GCACGGACGT CCCTTCGGAT GAAGGTGCAT TTCCCGTTGA CGGCCCATTC
CCTCCTACTG CGCTTGCCTC GGATGGTGCA GCGGTGGACG GGGTCCTGGT CGGCAACCGC
CTGATGCAAG CCGGCGAGTA CGAGCTGGCC CTGCGTGCCT TTTTCCGCGC CGGTGCCGAG
CAGGGCATGA CAGCGGAGAT ATTGTCCGGG ATCGGCTCGG CGAACCTGAA ACTCGGCCGC
CTCAACCAGT CCGAAACGCT GTTGCGCCGG GCGGTGGAGG AGTACCCCGA TTATGTGCCG
GGCTGGAACA ATCTGGGTGT TCTGCTGATG GAAAAAGGCG ATTACGGCGA AGCCTCCCGC
GTCTTCCGGC AGGCTTTCGC GCTGGACAGT GGCAATTCGG ACGACATTCG CAACAACCTG
AGCCTGGCTC TCGAAAAACG AGACGCGCTG CGCTATTCTC AGCCCAGCGA AAACAAGGAG
TTCGATCTGG TCTGGCAGGG AAATGGCAGT TACGCACTGA TCTCACCCTG A
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| Protein sequence | MAACTDVPSD EGAFPVDGPF PPTALASDGA AVDGVLVGNR LMQAGEYELA LRAFFRAGAE
QGMTAEILSG IGSANLKLGR LNQSETLLRR AVEEYPDYVP GWNNLGVLLM EKGDYGEASR
VFRQAFALDS GNSDDIRNNL SLALEKRDAL RYSQPSENKE FDLVWQGNGS YALISP
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