Gene Dshi_1117 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_1117 
Symbol 
ID5711085 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp1142513 
End bp1142929 
Gene Length417 bp 
Protein Length138 aa 
Translation table11 
GC content67% 
IMG OID641267028 
Productthioesterase superfamily protein 
Protein accessionYP_001532460 
Protein GI159043666 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism 
TIGRFAM ID[TIGR00369] uncharacterized domain 1 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value0.692478 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACCGCAG AGATCGAAAC CCGCATCGCC GAAAGCTTCG CGCGCCAGGG CCTCATGGGC 
AGTTTTGGTG CAGAGATCCT ATCGGTGAGC GCGGGCCACG TGGTCCTGCA AGCCCCGATC
CGTTCGGCAG CGCAGCAGCA GCACGGCTTC GCCCATGCAG GGCTGACCTT CGCGCTGGGA
GACAGTGCCG CGGGCTACGC CGCGCTGACC ACCATGCCGC CGGACCGCGA AGTGGTGACA
TCGGAGATGA AGATCAATCT GCTCGCCCCC GGCAAGGGCG CGTTCCTGCG CGCCGAAGGC
CGTGTCATCC GCGCGGGCAA GCGGCTGGTG GTGGTCACGG CGGAGGTCTT TCGCGACGAT
GGCGAGATGG TCGCCCTGAT GCAGGGGACC ATGATACCTG TATCCGCTAC GGCCTGA
 
Protein sequence
MTAEIETRIA ESFARQGLMG SFGAEILSVS AGHVVLQAPI RSAAQQQHGF AHAGLTFALG 
DSAAGYAALT TMPPDREVVT SEMKINLLAP GKGAFLRAEG RVIRAGKRLV VVTAEVFRDD
GEMVALMQGT MIPVSATA