| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1111 |
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| Symbol | tolB |
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| ID | 5711079 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1135659 |
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| End bp | 1136999 |
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| Gene Length | 1341 bp |
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| Protein Length | 446 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641267022 |
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| Product | translocation protein TolB |
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| Protein accession | YP_001532454 |
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| Protein GI | 159043660 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
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| TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.00131159 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.386204 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACGAG CCTTCTTGAG TGCCTTGAGC GTCGGTTTGG CGGCGCTGTT TCTGACCGGA
CCGGCGCAGG CCCAGGGCAA TCCCGGCCCC CTGCGGATCG AGATCACCGA AGGGGTGATC
GAACCGCTGC CCATCGCGGT GCCGCCGTTT CTGGCCGAGA CACCCGCCGC AAGCCAGTTC
GCCCGTGACA TCGCGCAGGT TGTGGCCGAT GATCTGGAAG GATCGGGGCT GTTCCGGGCC
ATCCCGGAGA ACGCCTTCAT CAGCCCGATC ACCAGCTTCG ACTCGCCGGT GCAATATGCC
GACTGGAAGG CGATCAATGC CCAGGCGCTG GTTACCGGGT CGGTGTCGGT GGCGAGCGAT
GGTCGGCTGG TGGTCAAGTT TCGGCTGTTC GACGTGTTCT CGGATGCGCC CTTGGGCAAG
GGGCTCCAAT TCGTGGCGAG TCAATCGAGC TGGCGGCGCA TGGGCCACAA GGTCGCCGAC
GCGGTCTATA GCCGGATCAC CGGGGAGGGC GGGTATTTCG ACAGCCGCGT GGTTTTCGTG
TCGGAAACCG GCCCCAAGAA TGCGCGGCAA AAGCGGCTCG CGATCATGGA TTATGACGGT
GCGAACGTGC AGTTCCTGAC CGACAGCAGT GCGATCGTGC TGGCGCCGCG GTTCTCGCCC
ACGGGCGATC GGGTGCTGTA TACATCCTAC GCGACGGGAC GGCCGCAGAT CACGCTGCTC
GATGTGAATT CCGTGCGCAG CCAAGGGCTT GGCTCCGCCC AGGGGGGCGA GATGAGCTTT
GCGCCGCGGT TCTCGCCGGA TGGGCGGTCG GTGGTGTTCT CGCTGACCAA TGGCGGCAAC
AGCGATATCT ACCGCCGCGA TCTGTCCAGC GGGGCGCAAA CCCGGCTGAC GGCCACCCCG
GCCATCGAGA CAGCGCCGAG CTTCTCGCCG GATGGGCGTC AGATTGTGTT CGAGAGCGAC
CGAAGCGGGT CGCAGCAGCT CTACGTGATG TCCGCCACGG GCGGAGAGGC GCGGCGCATC
AGCTTCGGCC CCGGGCGCTA CGGCACGCCG GTCTGGTCGC CGCGGGGGGA CCTGATCGCG
TTCACCAAGC AGAACCAGGG CCGCTTCCAT ATCGGGGTGA TGCGCACGGA CGGCTCCGAG
GAGCGGCTGC TGACGTCGTC TTTCCTCGAT GAAAGCCCGA CCTGGTCGCC CAACGGGCGG
GTGATCATGT TCACGCGGGA AACCTCCGGC GCGGGGGGGG CGCCATCGCT CTATTCGGTG
GATATCTCGG GCCGGAACTT GCGGCGCGTG CCGACCCCGG GGGCGGCGTC GGACCCGGCC
TGGTCGCCGC TACTGCCCTG A
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| Protein sequence | MKRAFLSALS VGLAALFLTG PAQAQGNPGP LRIEITEGVI EPLPIAVPPF LAETPAASQF
ARDIAQVVAD DLEGSGLFRA IPENAFISPI TSFDSPVQYA DWKAINAQAL VTGSVSVASD
GRLVVKFRLF DVFSDAPLGK GLQFVASQSS WRRMGHKVAD AVYSRITGEG GYFDSRVVFV
SETGPKNARQ KRLAIMDYDG ANVQFLTDSS AIVLAPRFSP TGDRVLYTSY ATGRPQITLL
DVNSVRSQGL GSAQGGEMSF APRFSPDGRS VVFSLTNGGN SDIYRRDLSS GAQTRLTATP
AIETAPSFSP DGRQIVFESD RSGSQQLYVM SATGGEARRI SFGPGRYGTP VWSPRGDLIA
FTKQNQGRFH IGVMRTDGSE ERLLTSSFLD ESPTWSPNGR VIMFTRETSG AGGAPSLYSV
DISGRNLRRV PTPGAASDPA WSPLLP
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