| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1049 |
|---|
| Symbol | |
|---|
| ID | 5711017 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 1082676 |
|---|
| End bp | 1083461 |
|---|
| Gene Length | 786 bp |
|---|
| Protein Length | 261 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641266960 |
|---|
| Product | short chain dehydrogenase |
|---|
| Protein accession | YP_001532392 |
|---|
| Protein GI | 159043598 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.027779 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACTTGA CCCTGACCGA CAAGACCGTG CTGGTGACCG GCGCCTCCAA GGGCATCGGG
CTGGCCACCG CGACCGCCTT TGCCGCCGAG GGCGCGCGGC TGACCCTGGT GGCGCGCGAT
GCCGCCCGGC TGGAGGCCGC CGCCGAGACC GTCGCCGCCG CGACCGGGCA CCGGCCCGGG
ATCTTCGCCG CCGATCTCGG CACGGATGCG GGCCGCAGCG CCCTGCACGG CGCCGTGCCG
ACCCCGGATG TGCTGGTCAA CAATGCCGGT GCGATCAAGG CGGGCGGGCT CGCGGACCTG
ACCATGGCGG ACTGGCGGAC GGGGTGGGAG CTGAAAGTGT TCGGCTATAT CCACCTGTGC
CAGCTCTTTT ATCCAGACAT GGCGGCGCGC GGCTCCGGCG TGATCGTGAA CGTGATCGGC
ATGGGCGGGC GCGCGGTGCG CCCGGCCTAT ATCTGCGGCG CGGCGGGCAA TGCGGCGCTC
ATCGGGTTCA CCCAGGCCCT GGGGGCGGAG GCGCAGGGGG CAGGCGTGCG GGTCCTGGGC
GTGAACCCGT CGCCGACGCT CACCGACCGG ATGGCGCAGT TCTTCAAGGG CAAGGCCCAG
GCGGAGTTCG GCGACGAGGC CCGCTGGCAA GAGCTGGTCG ATCCCGACAG GTTCCCCTAC
GGGCGCCCGA AATCGCCTCA GGAGGTCGCG GCGCTCTGCG TGATCATGGC CTCGCCGCGG
ATCGAATACC TCAACGGCAC GGTGATCGAC ATGGATGGCG GCGGGCAATG GACGGGGCGG
ATATGA
|
|---|
| Protein sequence | MDLTLTDKTV LVTGASKGIG LATATAFAAE GARLTLVARD AARLEAAAET VAAATGHRPG
IFAADLGTDA GRSALHGAVP TPDVLVNNAG AIKAGGLADL TMADWRTGWE LKVFGYIHLC
QLFYPDMAAR GSGVIVNVIG MGGRAVRPAY ICGAAGNAAL IGFTQALGAE AQGAGVRVLG
VNPSPTLTDR MAQFFKGKAQ AEFGDEARWQ ELVDPDRFPY GRPKSPQEVA ALCVIMASPR
IEYLNGTVID MDGGGQWTGR I
|
|---|
| |