| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0994 |
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| Symbol | |
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| ID | 5710510 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1023150 |
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| End bp | 1025069 |
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| Gene Length | 1920 bp |
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| Protein Length | 639 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641266905 |
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| Product | TRAP transporter |
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| Protein accession | YP_001532337 |
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| Protein GI | 159043543 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
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| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.166639 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAGCC AGGATATCGA CCCCGCACAA GTGGGCAGTG CCGAGGGCGT GCCCACCACC
CTGAGGGAAC GCGCCGCCGC GGGTCTGTCC CTGCTCATCG GGATTTTCGT CTTCTACACC
TCCTTTTTCG GCGCGTTCGA GACACTGATC CAGCGCGCGG GCTTCGTGGC GATGATCGTC
ACCATGGCGG TGCTGCTCTA TCCCACCGCG GGCAAGACGC GGCTGCGGCC CCTAGGCATC
GTGCTCGATC TGGCGATGGT GGGCTGGGTC GCGGTCTCCG CGGTCTATGT GATCGCGAAT
TTCGAGCGGA TCATGGTCGA GCTGCCCTTC GCCGAGCCGA TCGATGCCTG GCTCGGCTTC
GGCACCCTGC TGGTGATCCT GGAGCTTGCC CGCCGCACCG CGAGCGTGGT GTTTCCGATC
ATCGTGGGCG GCATGGTGGC CTATGCGTTT TTCGGCGATG CGATCCCCGG CTCCTTCGGG
CATCGCGGCT TCGGCATCTA CTATATCACC GAGGTGATGT TCCTGTCCGA CCGGGGCCTG
TGGGGGATGC TGGTCTCCAT CGCCTCGACG ACGCTCGCGG CCTTTATCCT GTTCGGCGCG
CTCTTGCTGC ACACCGGGGC CGGGCAGACC TTCTTCGACC TCTCGGCCCG CGCAGGCGGG
GCGAGCCCCG GCGGGGCGGC CAAGATCGCC ACCATCGCCA GCGGGCTTTT CGGGTCGATC
TCCGGCTCGT CGGTGGCCAA TATCGCCACC ACCGGCAACT TCACCATCCC GCTGATGAAG
CGCCTGCGCT ACCCCGCGCC CTTTGCCGGC GGGGTGGAGG CCGTGGCCTC CACTGGCGGG
CAGCTGGCCC CGCCGATCAT GGGCACCGCC GCCTTCGTGA TGGCCGAGCT TGTCGGCGTG
AACTACTGGA CCATCGTGGC CGTCGCCTTC CTGCCGGCGC TGCTGTTCTA TATCGGCGTC
TTCACCACCG TGCACCTGGT GGCCAAGCGT ACCGGGCTGG GGCAGGTGGA TGCCGCCGAC
CTGCCGGACT GGCGCGCGGC GCTGGACTGG CGGCGTCTGG CGCCCATCCT CGCCGGGATT
GCCGGGCTGG CCTGGGGCAT CTGGAACGGC AATTCGATCC AGCTGACCGC GTGCTACGGC
ATGATCGGGA TCATGGTCGC CTACACCGTG GCCACCCTGA CCGGCGGCGG CACTTGGGCC
GAGGTCATCG CCACCCTGAT CCGCGCCTTC CGCGATGGCG GCAAGGGCGT GGTGATCGTC
GGCATCCTGC TGGTGGCGGC ACAGGTCTTC GTGGCCATGG TCAACCTCAC CGGCGTCGGT
GTCGCCATCA CGTCCCAGAT CCTCGCCTTC GCCGGGGACA GCATCTGGCT GATCGCGGTG
ATCATGGCGG GTGTGTGCCT GATCGCGGGG ATGGGCCTGC CGACCTCGGC GGCCTACGTG
CTGGTGGCGG CGGTCTTCGC GCCGGTGCTG ATCCAGCAGG GGCTCGACCC GGTCATGGTG
CATCTCTTCG TGCTCTACTA TGCCGCGCTC AGCGTCATCA CGCCCCCGGT CTGCGTGGCG
GTCTTCGTGG CCAGTACCAT CGCGCAAGCC CCGTGGCTTG CGGTGGCCCG CGACACCCTG
CGACTGGGCG GGACGGCCTA TGCCCTGCCG ATGTTGTTCA TCGCCTATCC CGGGCTGCTG
CTGGCGGGTG GCCCGGCCGA GATCGCGCTG GCCATCGTCT CGGGCACGGT CTTCGTGATG
GCGGTGGCAG CGCTCTTTGC CGCGCAACCG GTGTCGCGCC TCGCACTGGT CTCGCCGCTC
TTCTGGATCG CGGTGGCGGG GCTCGCCCTG CTCCATGGCT GGCTGCCCTC GCTGGCCGCG
CTGGGCCTGT TGATCCTCGG CTTCCGGCTG CCGGAGGCGC CGCGCCGCGC GGCCGCCTAG
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| Protein sequence | MTSQDIDPAQ VGSAEGVPTT LRERAAAGLS LLIGIFVFYT SFFGAFETLI QRAGFVAMIV
TMAVLLYPTA GKTRLRPLGI VLDLAMVGWV AVSAVYVIAN FERIMVELPF AEPIDAWLGF
GTLLVILELA RRTASVVFPI IVGGMVAYAF FGDAIPGSFG HRGFGIYYIT EVMFLSDRGL
WGMLVSIAST TLAAFILFGA LLLHTGAGQT FFDLSARAGG ASPGGAAKIA TIASGLFGSI
SGSSVANIAT TGNFTIPLMK RLRYPAPFAG GVEAVASTGG QLAPPIMGTA AFVMAELVGV
NYWTIVAVAF LPALLFYIGV FTTVHLVAKR TGLGQVDAAD LPDWRAALDW RRLAPILAGI
AGLAWGIWNG NSIQLTACYG MIGIMVAYTV ATLTGGGTWA EVIATLIRAF RDGGKGVVIV
GILLVAAQVF VAMVNLTGVG VAITSQILAF AGDSIWLIAV IMAGVCLIAG MGLPTSAAYV
LVAAVFAPVL IQQGLDPVMV HLFVLYYAAL SVITPPVCVA VFVASTIAQA PWLAVARDTL
RLGGTAYALP MLFIAYPGLL LAGGPAEIAL AIVSGTVFVM AVAALFAAQP VSRLALVSPL
FWIAVAGLAL LHGWLPSLAA LGLLILGFRL PEAPRRAAA
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