| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0953 |
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| Symbol | |
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| ID | 5710644 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 977230 |
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| End bp | 978582 |
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| Gene Length | 1353 bp |
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| Protein Length | 450 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641266864 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_001532299 |
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| Protein GI | 159043505 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCCCATGT CCCACGCATC TCCCATCCCC ACCACCATAT CCGAACTCGC CCCCCTCCTG
CGCCTGTCGA TCCCGCTGAT GATCGGGCTC GCCGCCCCGA TGCTGATCGG GGTGATCGAC
ACGGTGATGA TCGCCCCCCT CGGGACAGAG CCCCTGGCCG CCGCCGGGAT CACCACTTCG
GTGGTCATCA TCCTGCTGTC CAGCCTGTGG GGCCTCGTGA CCATGACAGG TATCCGCATC
GCACAGGCCG AAGGCGCGGG CGACCGTCCG GGCGTAGCGA TCGAGCTGAA GACCGGGCTC
TGGCTGAGCC TGGCGGCCGG GGGGCTTGGC ATGGCCCTGA TGCTGGCGAT CCTGCCTGCG
CTGGGGCTGC TGGGCCAACC CGACAGCGTG CGCGCGATCC TGCCCGGCTA CTGGGTGTCC
ATGGCGGTCT GGCTGCTGCC CTTCACGGCG TTCTACGTGA TCAAGGGGCT GTTCGACGCG
GTGGACCGTC CCTGGGCCGG GGTGGCGCTC AGCTATCTCG GCGTGGTGGT GAACCTGCCG
CTGAACTGGC TGCTGATCTA TCCCGCGGGG CTGGGACTGC TCGGCGCGGG CCTTGCCAGC
ATCCTTAGCC AGACCCTCGC CCTCGGGGCG GCCTGGTTGG TCTGGCGCCG CGCGAAGGGC
CTCGCCCCCT GGCGGGTGCC GGTGCCCGCG GGCGCACTGC GCCTGCGCGC CCAGATCCGG
GATGGCTGGC CGCTGGTGGT GGGCTATGCG GGCGAAGGCG GGGCCTATGC CCTGATCGGG
TTGATGATGG GCTGGGTCGG GGCCACGGCG CTGGCCGCGA ACCAGATCGT GCATACCGTC
GGCGCGGTGG GCTACGTGTT TCCGCTGGGC ATGGCCATGG CGGCCTCGAT CCGGGTGGGC
CTGGCCCATG GCGCGGGCCA GACCGGACGA CTGCGCGCGA TCCTGCGCGC CGCCCTGACC
GTGGTCACCG GCTGGATGAT CCTGCTGATG GCCTTCTTCC TGATCGCGGG CGACTGGCTC
TCGGGCCTGC TGTCGGACGA CCCGGAGGTC GTCGCGCTGG CCGCCACGCT GTTCATCGCC
CTCGCCTGCA TGCAGATTGC CGACGGGGTG CAATCGACCA GCCTCGGCGC TCTGCGCGGC
ATGGGCGACA TGCGCTGGCC CACCGCCATG TCGCTCATCG CCTATTGGCC TCTGGCCCTG
CCCGCGGCCT ACGCGCTCGG GTTCTGGGCG GGGCTGGGGG CGCTCGGGCT CTGGGTCGGC
TTCGGTCTGG GCCTCGCCAT CGCCGCCATC ATGTTGCCCC TGCGCTTCTG GCACCTTACG
GGCAGGGCAC CTGCGATGCA GATCGGGCAT TGA
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| Protein sequence | MPMSHASPIP TTISELAPLL RLSIPLMIGL AAPMLIGVID TVMIAPLGTE PLAAAGITTS
VVIILLSSLW GLVTMTGIRI AQAEGAGDRP GVAIELKTGL WLSLAAGGLG MALMLAILPA
LGLLGQPDSV RAILPGYWVS MAVWLLPFTA FYVIKGLFDA VDRPWAGVAL SYLGVVVNLP
LNWLLIYPAG LGLLGAGLAS ILSQTLALGA AWLVWRRAKG LAPWRVPVPA GALRLRAQIR
DGWPLVVGYA GEGGAYALIG LMMGWVGATA LAANQIVHTV GAVGYVFPLG MAMAASIRVG
LAHGAGQTGR LRAILRAALT VVTGWMILLM AFFLIAGDWL SGLLSDDPEV VALAATLFIA
LACMQIADGV QSTSLGALRG MGDMRWPTAM SLIAYWPLAL PAAYALGFWA GLGALGLWVG
FGLGLAIAAI MLPLRFWHLT GRAPAMQIGH
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