| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0870 |
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| Symbol | |
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| ID | 5710560 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 885921 |
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| End bp | 887960 |
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| Gene Length | 2040 bp |
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| Protein Length | 679 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641266780 |
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| Product | transcriptional regulator |
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| Protein accession | YP_001532216 |
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| Protein GI | 159043422 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3629] DNA-binding transcriptional activator of the SARP family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.918273 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCAAG GTCAGAGGGC ATCTGGACAG GATGCGGTAG CGCACTCGAA AGAAGGCTTC
AAACCTTTGA ACACAAGCAA TTTTTCAGTA GCTTATCATT TCAATCAAGG GCACTGTTCC
CGCCCGACAC GTTTGAAGAA CCAAACTCTG GAGCTCGACT TCGATGCGTC CAAATCCTGT
CCAGGTGCAC CCTTCCCGGT GGAAGCAGAG CGGTCGGTGC ATCCCCAAAC CCAGCCCTCC
GCTCTGTTCA AGCCCGAGCA GGGGTCCGTA ATGAGTACTG GTCCCGAGCA GGGCACGACC
CAGCTGGTCA AGCTTTATGT ACTTGGCCCG CTGGGTCTCT TTTCTGCCGG GGACCGAAAT
CTGACACCGC GGGGCAAGAA GGCCCAGGGT CTGCTGGCGC TTCTGGCGCT GGCTCCGCGG
GGGCAGCGTA CCCGGGTCTG GTTGCGCGAC AAGCTGTGGA GTACGAGTGA CGAACAGAAA
TCTGCATCCT CCCTGCGGCA GACGGTGTTC GAGTTGCGCA AGGACCTGGG CGCGCTGGCC
GATGAGATCC TCGACATCAA CCGGATGTCG ATCGGCCTGC GGCTCGACCG GGTCTGGATC
GACCATGCCA CGGTGATGGG AGATCCCGCG CAGCTGCACG AGCTGGAGAT CACCGAGGAC
ACCGAACTGC TCGAAGGGAT CGACGTGGTC GACGAGGAGT TCGAGGACTG GCTCCAGATG
GAGCGGCAGA TCTGGTACGA CAAGGCGACA GACCTGCTGG AGGCGCATCC GCGCCCCGCC
CCGGCGGCCC GGCCGACCCC GGCGCAGACC CGCGGGCTGC TGGTGCCTGC GCGCAGCACC
GAGGATCTGA GCGAGACGCA GGCGCCGCAG ACCTGCTCCA TCGGGTTTCT GCCCAACATC
CAGCAGGGCT GCGACGGGGC GACCCAGCAC CTGGCCGATT ACGTGCTGGA AGGGGTGGCG
CGGAACCTGC GGGAGTTCGA GCCGGTGGCG GTGTTCGATT TCCGCGATCC GGGCGTCCAT
TCGGACCGGT TCACCAATGC ATTCGAGACC GAGTATTATA CCCGCGTGCG GACCTTGCAG
GTGCGCGACA GCCTGACCCT GACGTTTTTC CTTTATCGGT CCAGCCGGAT GGCGCTGGAA
TGGTCCCAGT CGATCCAGAC CTCCGCGGAC GAGATCGTGC AGAATTCCAT GCTGCTGGAG
GGGTTCATCG CGCAGAATGT CGACCGGATG GCCAAGTCGA TGTTCGAGGA CCGGTTGCGG
ATGCTGGACA ACCGCGAGGA CTGGCCGCCG AAGGTCGGGT ATTCGGCGCT GAACCTGATG
TTCAAGCTGG ACGAGAACGC GCTGAGCAAC TCGGAATCCA TGCTGCTGCG CGGGGCCGAG
AGCGAAGAGG ACAGCCCGAT CTACCCGGCC CTGCGCGCCT ATCTGACGAC CTTCAAGCTG
GGCGAGAACA TGGGGGTTTT GAACCGCGGC GAGCTGGAGG ATGCGCGCGC CAACGCCGAG
GCCGCCCTGG GGCAGAACCC GTTCAACTCG ATCTCGCTGG CCTGTATCGC CCATGTGATG
GGCTATGTGT TTCACGAGCA TGACATGGCC GGCGGGCTGC TGGAGCAGGC GCTGAACCTG
AACGCGTCGC AACCTTTCGT GTGGGATCAC TACGCGCTGC ACAAGCTTTA TTCCGGGGAG
TTCGAGGCGG CCTACCGCGC CGCCGAGCGG GGCGCGGCCC TGGGTGCCTT CAGCCCGATC
AGCTACAGCT ACGACACCAC GCTGGCGATG GCCGCAACCA TGGCGGGCGA TCATCGGCGC
GCGATCATGG CCGGGCAGCG GGCCCTGCGC AAACAGCCGC GCTTTGCCGC CGCGATGCGG
TATCTGTTGC TGAACTACGC AAAGCTCGGG CGCGAGGCGG AGGCCCAGGA GATGTTCACG
CGGCTGACCG CCGTGGACCC GGATTTCGGC GACCCGGAGG TGCAGAAGGA GCGCTTCCGC
TTTGCCCAGA AACAGGACGA GACCAACGTT CTGAGCATCA TAAAAAGACT GACATCGTGA
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| Protein sequence | MTQGQRASGQ DAVAHSKEGF KPLNTSNFSV AYHFNQGHCS RPTRLKNQTL ELDFDASKSC
PGAPFPVEAE RSVHPQTQPS ALFKPEQGSV MSTGPEQGTT QLVKLYVLGP LGLFSAGDRN
LTPRGKKAQG LLALLALAPR GQRTRVWLRD KLWSTSDEQK SASSLRQTVF ELRKDLGALA
DEILDINRMS IGLRLDRVWI DHATVMGDPA QLHELEITED TELLEGIDVV DEEFEDWLQM
ERQIWYDKAT DLLEAHPRPA PAARPTPAQT RGLLVPARST EDLSETQAPQ TCSIGFLPNI
QQGCDGATQH LADYVLEGVA RNLREFEPVA VFDFRDPGVH SDRFTNAFET EYYTRVRTLQ
VRDSLTLTFF LYRSSRMALE WSQSIQTSAD EIVQNSMLLE GFIAQNVDRM AKSMFEDRLR
MLDNREDWPP KVGYSALNLM FKLDENALSN SESMLLRGAE SEEDSPIYPA LRAYLTTFKL
GENMGVLNRG ELEDARANAE AALGQNPFNS ISLACIAHVM GYVFHEHDMA GGLLEQALNL
NASQPFVWDH YALHKLYSGE FEAAYRAAER GAALGAFSPI SYSYDTTLAM AATMAGDHRR
AIMAGQRALR KQPRFAAAMR YLLLNYAKLG REAEAQEMFT RLTAVDPDFG DPEVQKERFR
FAQKQDETNV LSIIKRLTS
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