| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0791 |
|---|
| Symbol | |
|---|
| ID | 5711227 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 798789 |
|---|
| End bp | 799526 |
|---|
| Gene Length | 738 bp |
|---|
| Protein Length | 245 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641266700 |
|---|
| Product | protein of unknown function DUF541 |
|---|
| Protein accession | YP_001532137 |
|---|
| Protein GI | 159043343 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2968] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.00137694 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.424352 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCAGC CCGCCCGCAA CTGCCGTGCC CCGCTCTCTC GTCTTGTGCT GATGCTTGTT
CTGCTGGCCG GTCTCGGTCT GTCCCCGACC GCCCGCGCCG AGGAGGCCGG GCCGGGCCTG
CTCAGCGTGA CCGGAGAGGC CAGCGTGCCC GCAATCCCCG ACATGGCCAC CCTGCGCCTT
GCGGTGGTGA CCGAGGCCCG CACCGGCGCG CAGGCGCTTG CCGAGAATAC CGAACGCATG
CAGGCGGTTC TGGCAGAACT GCGCGGCTTC GACATCGCGG AGCGGGATCT GCAGACCTCG
GACCTGACGC TGAATCCGGT CTATGAGCAG GGGACGGAGC TACGCAATCT GCCGCGCCGG
ATCGTCGCCT TCCGGGCCCA GAACGCGCTG ACCGTACGGG TGCGCGACCT CGAACGGCTG
GGCGAGATCC TCGATGCCAG CGTGCGCGAC GGCGCCAACA GTTTCGGCGG GCTGAGCTTC
GGCGTGCAGG CACCCGGCCC GCTGGAGGTC GAAGCCCGCG AACGGGCGAT GCAGGACGCG
CTCGCCCGCG CGCGCACTCT GGCCGAGGCC GCCGGCGTGG CCCTCGGTCC GATCCGGTCG
ATCACCGAAC AGGGCGGCAT GCGCGGCCCG ATGATGATGC GCTCCGAGAT GGCCATGGCC
GACAGCGCCG TGCCCGTCGC CGCCGGCGAG GTCAGTGTCC GCGCTGCGGT GTCCCTGGTG
ATCGAACTCG TCCAATAG
|
|---|
| Protein sequence | MTQPARNCRA PLSRLVLMLV LLAGLGLSPT ARAEEAGPGL LSVTGEASVP AIPDMATLRL
AVVTEARTGA QALAENTERM QAVLAELRGF DIAERDLQTS DLTLNPVYEQ GTELRNLPRR
IVAFRAQNAL TVRVRDLERL GEILDASVRD GANSFGGLSF GVQAPGPLEV EARERAMQDA
LARARTLAEA AGVALGPIRS ITEQGGMRGP MMMRSEMAMA DSAVPVAAGE VSVRAAVSLV
IELVQ
|
|---|
| |