| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0689 |
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| Symbol | prpB |
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| ID | 5711124 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 694835 |
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| End bp | 695713 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641266598 |
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| Product | methylisocitrate lyase |
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| Protein accession | YP_001532036 |
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| Protein GI | 159043242 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2513] PEP phosphonomutase and related enzymes |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.106645 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCGGCC CGGCCACCCC TTGCTGGGAT TTCACCCGCC CCGGCATCGT GATGGCGCCC
GGGGTCTATG ACGCCCTGAC CGCCTCGCTG GCCGAGGCCG CGGGGTTCCC CGCGCTCTAC
CTGTCGGGCG CGGCGGTCTC CTACACACGG CTCGGGCGGC CCGATATCGG CCTGACCTCG
GTGACCGAGA TGACCGAGAC CCTGTCGCTG ATCCGCGACC GGGTCAGCAC GCCGATCATA
ATCGATGCGG ACACGGGCTT CGGCAATGCG CTCAATGCCC AGCGCACCAT GCGGCTCTAT
GAGCGCGCCG GGGCCAATGC GCTCCAGATC GAGGATCAGG CCTACCCCAA GCGCTGCGGG
CATCTGGCCG ACAAGACGCT GATCCCGGCG CAGGAAATGG CCGGCAAGAT CCGCGCCATG
GCCGATGCCC GCCACGCGGC GCAAACCCTG ATCATCGCAC GCACCGACGC GGTGGCGGTG
GAGGGGTTCG AGGCCGCGCA GGAGCGGGCC GAGACCTACC TGGAGGCCGG GGCCGACATC
CTGTTCATCG AGGCCCCGCA ATCGGAAGCG CAACTGACCG CCATCGCCCA ACGGTTCCGG
GGTCGGGTAC CCCTGCTTGC CAACATGGTG GAGGGCGGCG AGACCCCAAT GAAATCCGCC
CGGGAGCTCG AAGCGCTGGG ATATGCGCTG GTCATCTTTC CCGGCGGGAT CGTCCGGGCC
CTCGCCCGCA CAGCGGAAGC CTACTATCTG AGCCTGTCGG AGACCGGATC GAACGCGGCC
TTCCGCGACC GGATGTTCGA CTTCCAGGAC CTGAACGCGC GGCTGGGCAC GGCGGAGATG
CTGGCGCGCG GAAAGGCCTA TGAAGGACCG GGCACATGA
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| Protein sequence | MSGPATPCWD FTRPGIVMAP GVYDALTASL AEAAGFPALY LSGAAVSYTR LGRPDIGLTS
VTEMTETLSL IRDRVSTPII IDADTGFGNA LNAQRTMRLY ERAGANALQI EDQAYPKRCG
HLADKTLIPA QEMAGKIRAM ADARHAAQTL IIARTDAVAV EGFEAAQERA ETYLEAGADI
LFIEAPQSEA QLTAIAQRFR GRVPLLANMV EGGETPMKSA RELEALGYAL VIFPGGIVRA
LARTAEAYYL SLSETGSNAA FRDRMFDFQD LNARLGTAEM LARGKAYEGP GT
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