| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0685 |
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| Symbol | apbE2 |
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| ID | 5711120 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 689465 |
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| End bp | 690361 |
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| Gene Length | 897 bp |
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| Protein Length | 298 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641266594 |
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| Product | ApbE family lipoprotein |
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| Protein accession | YP_001532032 |
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| Protein GI | 159043238 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG1477] Membrane-associated lipoprotein involved in thiamine biosynthesis |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.0743531 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAACCTGC ATCGACGTCG GTTTCTCAGC ATCAGCGCGG CGGCCATGGC CGCGGGCCCG
GTTGCGGCGG CGGGCGCGGG CTTCACCCGT TGGCGCGGCG AGGCGCTGGG GGCGGAATGC
GAGATCACCC TGCACGCCCC CCCGGGCAAG GCACAACCGG CGCTGGACGC GGCCCGCGCC
GCCCTGCGCG CGGTGGAGAC GCAATTCAAC CTCTATGATC CCACCTCGGC GCTGGCGCGG
CTGAACGCGA CCGGGCGGCT GGAGGCGCCG GAGCCGATGT TCCTCGCGCT GATGGAGTTG
TCGCGGCAGA TGTACGAGGC CACGGAAGGA CGCTTCGACC CGAGCATCCA GCCGCTCTGG
TCCGCATTGG CCCGGGGCCT CGATCCCGAG ACCGCACAGG CGCAGGTGGG GTGGTCCCGG
GTGCGCTGGG ACGCGGGGGC GGTGCGGCTC GCCCCCGGTC AGGCACTCAG TTTCAACGGG
GTCGGACAGG GCTTTGCCAC GGACCGTGTG GCCGAGACGC TGGCCGCCCA TGGCATGGGC
CGGTTGCTGG TCAATATCGG GGAGTTTCGC GGCGCTGGCG GGCCCTGGCG CGTGGGGCTT
TCGGACCCGG CGCATGGGCT CGTCGGCACG CGGCAGATCA CCGATGGGGC GATTGCCACC
TCCAGCCCCC GGGCGCTGTC CCTCGGCGGG ACGGCACATA TTCTCGACCC GCTGGGGCGG
CGCGTGCCGC GCTGGTCCAC GGTGTCGGTG GAGGCAGAGA CCGCGACGGT GGCGGATGCG
CTCTCCACGG CGCTGTGCCT GATGCGGCGT GAAGAGATTG GCGCGGTGCA GGCGCGGGTG
CCCGCCCTGC GGCGGGTCAC CCTGATCGAT CATGCGGGCG ATCTGGTCAC CCTGTGA
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| Protein sequence | MNLHRRRFLS ISAAAMAAGP VAAAGAGFTR WRGEALGAEC EITLHAPPGK AQPALDAARA
ALRAVETQFN LYDPTSALAR LNATGRLEAP EPMFLALMEL SRQMYEATEG RFDPSIQPLW
SALARGLDPE TAQAQVGWSR VRWDAGAVRL APGQALSFNG VGQGFATDRV AETLAAHGMG
RLLVNIGEFR GAGGPWRVGL SDPAHGLVGT RQITDGAIAT SSPRALSLGG TAHILDPLGR
RVPRWSTVSV EAETATVADA LSTALCLMRR EEIGAVQARV PALRRVTLID HAGDLVTL
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