| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0646 |
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| Symbol | |
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| ID | 5711481 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 645472 |
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| End bp | 647574 |
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| Gene Length | 2103 bp |
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| Protein Length | 700 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641266554 |
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| Product | TRAP-type uncharacterized transport system, fused permease components |
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| Protein accession | YP_001531993 |
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| Protein GI | 159043199 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
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| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGACC CATCCGATGA CAGCGGCGGC TTGCGCCGAT TTTCCGGCCT GCCGGGCACC
CTGATCGCGG TTGCCTCCTT CCTGATCGCG GTCGGCCATA TCTACGTGGC CTTCGATCCC
GTCCTGTCGG AGTTGCAGCG CAACGCCTTC CACTTCGCGG GCTTTGCTGC GCTCGCGGCC
CTGTTCTATC CCATCGCGCG GGGGCGGCTG GCCCTCGGGG TCGACCTGGT GCTGGGCTTG
GTGGTCGCGG CGGCGGCGGT GTATCTCAGC TATGCCGAGG ATGGCATCTA CGACCGGGGC
GTGAAGTTCA ACACCGCCGA CTGGATCGCC GCCATCATCG TGGTTCTGGG CGCGATCGAG
CTGACCCGGC GGCTGACCGG CTGGATCATC CCGGCCCTGA TCGTGATCGC GCTCAGCTAC
GTGGTCTGGT GGGGTAAGTT CGTGGGCGGG GTGTTCAACT TCCCCGGCCT GAAACTGGAA
TCGGTGCTGT TCCGCTCGGT CTATGGCGAT GATGCGATGT TCGGCTCCAT CGCCAGCATT
TCGTCGACCT ACGTGTTTCT GTTCATCATT TTCGGCGCGT TCCTGCTGCG CTCCGGCGCG
GGGGAGTTCG TGATCAACCT GGCGCGCGCC GTGGCCGGGC GCATGGTCGG GGGGCCGGGC
ATCGTGGCGG TGATTGCCAG CGGGCTGACG GGCACGATCT CGGGCTCGGC GGTGGCCAAC
ACCGCATCGA CCGGCGTGAT CACCATCCCG CTGATGAAGC GCGCGGGCTT CCAGCCGAAA
TTCGCAGGCG GGGTCGAGGC CGCGGCCTCC ACCGGCGGGC AGCTGATGCC GCCGATCATG
GGGGCCGGGG CCTTCGTGAT GGCGAGCTTC ACCGCCATCC CCTACGAGAC CATCGTGGCG
GTCGCGGCCC TGCCTGCGCT GCTTTATTTC CTGTCGGTGG CCTTCTTCGT GCGGATCGAG
GCGCGGCGCC AGAACCTGCC GCCCATGGCC GACGAGGGCC AGACCCTGCG CCGTGCCTTC
CTGGAGGGCG GCGCGAGCTT CGTGTTGCCC ATCGGACTGC TGATCGGGAT GCTGGTGAGC
GGGTTCACCC CCACCTATGC GGCGGTGTTC GGGATCATCG CGGTGGTGGC GTCGAGCTGG
CTGACCCGCA CCCGCATGGG CCCGCGCGCG GTGTTCGAGG CGCTGGTCAT GGGCACAAAG
GGGATGATCC TGACGGCGGT GCTCCTGTGT TCGGTTGGGT TGGTGGTCAA CGTGATCGCC
ACGGCGGGGG TCGGCAACAC CTTCAGCCTG ATGATCGCCG CCTGGTCGGG CGGAAATATC
CTTGTCGCGA TTGTACTTAT CGCCTTGGCG AGCCTGGTTC TGGGCATGGG GCTGCCGGTG
ACGGCGGCCT ATATCGTGCT GGCGACGCTC TCGGCCCCGG CGCTGGCGGG CATGATCGCC
GACCAGGTGG TGATCGCGCA GATCGCCGCC GGGACCTTGC CGCCCACGGC GCAGGCGATC
TTCATGCTGG GCGCGCCCGA CCAGATGGCG CTGCTCGCAG CCCCGATGTC CGAGGCCGAT
GCAACCGCGC TGGTCCGCGG CCTGCCCCTG GAAGTGGCCG CGCCCCTGCG CGACCTGGTG
GTGCCGCCCG AGGCCGCGGT CGCGGCCCTT CTGTCGGCGC ATATGATCGT CTTCTGGCTC
AGCCAGGACA GCAACGTCAC CCCGCCCGTG GCCCTTGCGG CCTTCACCGC GGCGGCGATT
GCCAAGGCGC CGGCGATGGC GACGGGGGTG GCGAGCTGGA AGCTGGCCAA GGGTCTCTAC
ATCGTGCCGG TGCTCTTTGC CTACACGCCG CTTCTGTCGG GCGACTGGGG TGCTATGGTG
CAGGTCTTTG CCTTCGCGGT GGTCGGCATC TACGCGCTGG CGGCGGGGAT TCAAGGCTGC
ATGGAGCGGC CCCTGGGCCT TTTTCCGCGA GTTCTGAGCG GGCTGGCGGG GCTGGCCTGC
CTGTGGCCGG GTCTGATCTG GGCCAATGTC GCGGGCGTGG TCTGCTTGGC GCTGCTGCTG
GCGTGGAACC TGCGCGACGG GGTGCCGGTG GCCGGGGCGC CGAGGGCCGA GACCGACGCG
TGA
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| Protein sequence | MPDPSDDSGG LRRFSGLPGT LIAVASFLIA VGHIYVAFDP VLSELQRNAF HFAGFAALAA
LFYPIARGRL ALGVDLVLGL VVAAAAVYLS YAEDGIYDRG VKFNTADWIA AIIVVLGAIE
LTRRLTGWII PALIVIALSY VVWWGKFVGG VFNFPGLKLE SVLFRSVYGD DAMFGSIASI
SSTYVFLFII FGAFLLRSGA GEFVINLARA VAGRMVGGPG IVAVIASGLT GTISGSAVAN
TASTGVITIP LMKRAGFQPK FAGGVEAAAS TGGQLMPPIM GAGAFVMASF TAIPYETIVA
VAALPALLYF LSVAFFVRIE ARRQNLPPMA DEGQTLRRAF LEGGASFVLP IGLLIGMLVS
GFTPTYAAVF GIIAVVASSW LTRTRMGPRA VFEALVMGTK GMILTAVLLC SVGLVVNVIA
TAGVGNTFSL MIAAWSGGNI LVAIVLIALA SLVLGMGLPV TAAYIVLATL SAPALAGMIA
DQVVIAQIAA GTLPPTAQAI FMLGAPDQMA LLAAPMSEAD ATALVRGLPL EVAAPLRDLV
VPPEAAVAAL LSAHMIVFWL SQDSNVTPPV ALAAFTAAAI AKAPAMATGV ASWKLAKGLY
IVPVLFAYTP LLSGDWGAMV QVFAFAVVGI YALAAGIQGC MERPLGLFPR VLSGLAGLAC
LWPGLIWANV AGVVCLALLL AWNLRDGVPV AGAPRAETDA
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