| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0435 |
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| Symbol | atpD1 |
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| ID | 5711351 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 427117 |
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| End bp | 428505 |
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| Gene Length | 1389 bp |
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| Protein Length | 462 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641266339 |
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| Product | F0F1 ATP synthase subunit beta |
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| Protein accession | YP_001531784 |
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| Protein GI | 159042990 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0055] F0F1-type ATP synthase, beta subunit |
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| TIGRFAM ID | [TIGR01039] ATP synthase, F1 beta subunit
[TIGR03305] alternate F1F0 ATPase, F1 subunit beta |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.575594 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGGCCG ATCCCGAGGT CCACTTCGAA GGGACCATCG TCGCCATTCG CGGCGGTGTC
GTGGACGTTG CGTTCGCCGA AGCGGTGCCG CGCATCCACG CGCTGATCGT GGCGGGCGGC
GTGGCGATGG AGGTGGCCTC CATCGTCGGC GAGGGGGTGG TGCGCTGCAT CGCCCTCGGC
CCGACCCGCG GCCTGGGTCT CGGTACCCGT GCCACGGGCA CGCGCGCGGG CATCGAGGTG
CCGGTGGGCG AGGGGGTGCT GGGACGGATG CTGGATATGT TCGGCGCGCC GCTCGACGGT
GCGCCGCCGC CCGAGGCCAC GGCCCGGCGC CCGATCCACC GCCCGCCGCC GGTCCTGTCG
GACCGGGTGC TGCGCGCCGA GGTCCTGGAG ACCGGGATCA AGGCCATCGA CCTGCTGTCG
CCCATCGAAC GGGGCGGCAA GACGGGCCTG TTCGGTGGCG CGGGCGTGGG CAAGACCGTT
CTCCTGAGCG AGCTGATCCA CAACACGGTG GAGCATCACC ACGGCGTCAG CCTGTTCTGC
GGGATCGGGG AGCGGTCCCG CGAGGCCGAG GAATTGTGGC GCGAGATGGG CGAGGCCGGG
GTGCGCGAGC GCATGGTGAT GCTGTTCGGC CAGATGAACG AGGCGCCGGG CGTGCGGTTC
CTGGTGGGTC ATTCGGCGCT GACCATGGCC GAATATTTCC GCGACGACCG CGAACAGGAT
GTGCTGTTGC TGATCGACAA CATCTTCCGC TTCGTGCAGG CGGGCTCGGA GGTGTCGGGC
CTGCTCGGCC GGATGCCGAG CCGCGTGGGC TATCAGCCGA CCCTGGCGAC GGAGCTGGCC
GCGCTGCAGG AGCGCATCGC CTCGACCCGG CGCGGTGCGA TCACGTCGAT CCAGGCGGTT
TACGTTCCGG CGGACGATTT CACCGACCCG GCGGCGGCGC ATATCTTTTC GCATCTGTCG
GCCTCGGTCG TGTTGTCGCG CAAGAGGGCG TCCGAGGGGC TTTATCCGGC GGTCGATCCG
CTGGCCTCGA CCTCTGTCAT GCTGACGCCC GAGGTCGTGG GACAGCGCCA TTACGACATC
GCGCGCGGCG TGCGCCGGAC CTTGGCGGAG TACGAGGACC TGCGCGACAT CATCGCGATG
CTGGGGATCG AGGAGTTGTC GGCCCATGAC CGGGCCGTGG TCGCCCGCGC GCGGCGGCTG
GAGCGCTTTC TGACCCAGCC GTTCTTCACG GTGGGGGCAG CGGCGGGCAC CCTGGGCAAG
CTGGTACCGA TCGCCGAGAC CCTGGACGGC TGCGAGGAGA TCCTGTCGCA GACCAGCTTC
GAGCGGCCCG AGAGCGCCTA TTACATGATC GGCGCGCTGA GCGATCTGCG AAAGGAGGCC
GCCGCATGA
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| Protein sequence | MPADPEVHFE GTIVAIRGGV VDVAFAEAVP RIHALIVAGG VAMEVASIVG EGVVRCIALG
PTRGLGLGTR ATGTRAGIEV PVGEGVLGRM LDMFGAPLDG APPPEATARR PIHRPPPVLS
DRVLRAEVLE TGIKAIDLLS PIERGGKTGL FGGAGVGKTV LLSELIHNTV EHHHGVSLFC
GIGERSREAE ELWREMGEAG VRERMVMLFG QMNEAPGVRF LVGHSALTMA EYFRDDREQD
VLLLIDNIFR FVQAGSEVSG LLGRMPSRVG YQPTLATELA ALQERIASTR RGAITSIQAV
YVPADDFTDP AAAHIFSHLS ASVVLSRKRA SEGLYPAVDP LASTSVMLTP EVVGQRHYDI
ARGVRRTLAE YEDLRDIIAM LGIEELSAHD RAVVARARRL ERFLTQPFFT VGAAAGTLGK
LVPIAETLDG CEEILSQTSF ERPESAYYMI GALSDLRKEA AA
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