| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0381 |
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| Symbol | livF1 |
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| ID | 5711290 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 363531 |
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| End bp | 364355 |
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| Gene Length | 825 bp |
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| Protein Length | 274 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641266279 |
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| Product | high-affinity branched-chain amino acid transport ATP-binding protein livF |
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| Protein accession | YP_001531731 |
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| Protein GI | 159042937 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0410] ABC-type branched-chain amino acid transport systems, ATPase component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.246654 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.90664 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCGATA CAGGCCGGAC CGAGGAAACG CTCCTCGAGG TCAACAATAT CGAAGTGATC
TACAATCACG TGATCCTGGT GCTCAAGGGC GTCAGCCTGA CCGTGCCCAA GGGCGGGATC
ACCGCGCTGC TGGGCGGCAA TGGCGCGGGC AAGACCACGA CGCTGAAATC GATCTCGAAC
CTGCTGCATT CCGAGCGCGG CGAGGTCACC AAGGGCACCA TCAGCTACCG CGGCGACCGG
GTGCAGGACC TCAGCCCGTC GGACATGGTC AAGCGCGGGG TCATCCAGGT GATGGAAGGT
CGCCACTGCT TCGAGCATCT GACGGTGGAG GAAAACCTGC TGACCGGCGC CTATACGCGG
CGCGACGGAC GCGGGGCGAT CGCCGATGAC CTGGAACTGG TCTACACCTA CTTTCCGCGC
CTCAAGGAGC GCCGCAAATC CCAGGCGGGC TACACCTCCG GCGGGGAGCA GCAGATGTGC
GCCATCGGCC GGGCGCTGAT GTCGCGCCCC GAGACCATCC TGCTGGACGA GCCGTCCATG
GGGCTGGCGC CGCAGCTGGT GGAAGAGATC TTCACCATCG TGAAGAACCT CAACGAACGC
GAAGGCGTGT CCTTCCTTCT GGCAGAGCAG AACACCAATG TCGCCCTGCG CTTTGCCCAT
CACGGCTATA TCCTCGAATC CGGCCGGGTG GTCATGGAAG GCCCGGCGGC CGAGTTGCGC
GAGAACCCGG ACGTGAAGGA ATTCTACCTC GGCATGTCCG ACGAGGGGCG CAAGAGCTTC
CGCGACGTGC GCTCCTACCG CCGCCGCAAA CGCTGGCTGA GCTGA
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| Protein sequence | MLDTGRTEET LLEVNNIEVI YNHVILVLKG VSLTVPKGGI TALLGGNGAG KTTTLKSISN
LLHSERGEVT KGTISYRGDR VQDLSPSDMV KRGVIQVMEG RHCFEHLTVE ENLLTGAYTR
RDGRGAIADD LELVYTYFPR LKERRKSQAG YTSGGEQQMC AIGRALMSRP ETILLDEPSM
GLAPQLVEEI FTIVKNLNER EGVSFLLAEQ NTNVALRFAH HGYILESGRV VMEGPAAELR
ENPDVKEFYL GMSDEGRKSF RDVRSYRRRK RWLS
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