| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0359 |
|---|
| Symbol | lspA |
|---|
| ID | 5711268 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 342204 |
|---|
| End bp | 342680 |
|---|
| Gene Length | 477 bp |
|---|
| Protein Length | 158 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641266257 |
|---|
| Product | lipoprotein signal peptidase |
|---|
| Protein accession | YP_001531709 |
|---|
| Protein GI | 159042915 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0597] Lipoprotein signal peptidase |
|---|
| TIGRFAM ID | [TIGR00077] lipoprotein signal peptidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGCGC TGGCCCTCTC GGCGGTTGTC GCCTTCGCCA TCGACCAGCT CAGCAAGCTG
GTCGTCGTGC ATTGGCTGAA CCTCAAGGAG ATCCGGGCGA TCGACGTGCT TCCACCTGTC
CTGAACTTCC GGATGGGGTG GAACCACGGG GTGAATTTCG GCCTGTTCGG CTCGGACAGC
GAGGCGATGC GCTGGGCCCT GATCGTGCTG GCGCTGGCGA TCTGCGCGGG CGTGGTGATC
TGGGTGCGGC GCGAGGGCGG CGGGACGCGG GTGATGGTCA GCGCGGGCCT GCTGGTCGGT
GGCGCGCTGG CCAATGTGCT CGACCGGGTG ATCTACGGCG CGGTGGCGGA TTTCCTCAAC
GTGAGCTGCT GCGGCATCCG CAACCCGTTC ACCTTCAACC TGGCGGATGT GGCGATTTTC
GCCGGGGCGC TGGGGCTGGT GCTGTTCACC GGCAAGACGG ATGAAAACCC CTCGTGA
|
|---|
| Protein sequence | MRALALSAVV AFAIDQLSKL VVVHWLNLKE IRAIDVLPPV LNFRMGWNHG VNFGLFGSDS
EAMRWALIVL ALAICAGVVI WVRREGGGTR VMVSAGLLVG GALANVLDRV IYGAVADFLN
VSCCGIRNPF TFNLADVAIF AGALGLVLFT GKTDENPS
|
|---|
| |