| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0315 |
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| Symbol | rluC |
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| ID | 5711565 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 303518 |
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| End bp | 304564 |
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| Gene Length | 1047 bp |
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| Protein Length | 348 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641266211 |
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| Product | ribosomal large subunit pseudouridine synthase C |
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| Protein accession | YP_001531665 |
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| Protein GI | 159042871 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.458148 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGGTG TGCAGACCCT GACCGTGGGC GTGGACGAGG GGGATCAGCG GCTCGACCGC
TGGCTGCGGC GGCGGTTTCC CCATCTGGGC CAGGGCCGGA TCGAGAAGAT GTGCCGCAAG
GGCGAGCTGC GCGTGGATGG CGGGCGGGTG AAGCCCGCGA CGCGCCTGCA GACCGGGCAG
GCCGTGCGGG TGCCGCCCCT GCCGGCGCCG GGCGAGATCA CGGCGCGGCC CGCGCGGGCG
CGGATCTCGG ACGCGGATCG CGAGATGCTG CAGGGCACGG TGATCTACCG CGACGCGGAT
ATCCTGGCGC TGAACAAGCC CGCCGGGCTG CCGGTGCAGG GCGGCTCTGG GCAGGAGCGC
CACATCGACG GGATGGCCGA GGCGCTGCAA TTCGAGCTCG ACGAGCCGCC GCGCCTGGTG
CACCGGCTCG ACAAGGACAC GTCGGGCGTG CTGCTGATGG CGCGGACCCG GCGCAGCGCC
GCGGCCCTGA CGGCGGCATT CCGGGCGCGC CAGACGCGCA AGATCTATTG GGCGGCGGTG
GCCGGCGTGC CCCAGCCACA GCTGGGCACC GTGCGCTATG CCCTGATGAA GGCGCCGGGG
CACGGCAAGC GCGGCGAGGG GGAGAAGATG CTCTGCATCG ACCCCCGGCA GATGGACGCC
CACCCGGACG CCAAGCGCGC GACGACGGAT TACGCCGTGC TCTCGGCCCT GGGGCGGCGG
GTGGCCTGGT GCGTGCTGGT GCCGATCACC GGGCGGACGC ACCAGTTGCG CGCGCATATG
GCCGAGCTGG GGCATCCGAT CATCGGCGAC GGCAAGTATG GCGGGTCGGG GCAGGAAAAC
CTCGGCGATG GCTGGGGCGC GCAGCTGGGC GGCGAGATGT CGAAGAAGCT GCATCTACAT
GCGCGACATC TGAGCCTGAC GCACCCTGTC ACCGGCGCGC AGCTGTCGCT GACCGCGCCG
CTGCCGCCCC ATATGGCGCG CACCTGGGAG GCGCTGGGCT GGGATGCGCG GGACGTGCCC
GTGGACCCGT TCGAGGCGCT TGAATGA
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| Protein sequence | MSGVQTLTVG VDEGDQRLDR WLRRRFPHLG QGRIEKMCRK GELRVDGGRV KPATRLQTGQ
AVRVPPLPAP GEITARPARA RISDADREML QGTVIYRDAD ILALNKPAGL PVQGGSGQER
HIDGMAEALQ FELDEPPRLV HRLDKDTSGV LLMARTRRSA AALTAAFRAR QTRKIYWAAV
AGVPQPQLGT VRYALMKAPG HGKRGEGEKM LCIDPRQMDA HPDAKRATTD YAVLSALGRR
VAWCVLVPIT GRTHQLRAHM AELGHPIIGD GKYGGSGQEN LGDGWGAQLG GEMSKKLHLH
ARHLSLTHPV TGAQLSLTAP LPPHMARTWE ALGWDARDVP VDPFEALE
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