| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0311 |
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| Symbol | luxR1 |
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| ID | 5711561 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 300364 |
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| End bp | 300975 |
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| Gene Length | 612 bp |
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| Protein Length | 203 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641266207 |
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| Product | transcriptional regulator |
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| Protein accession | YP_001531661 |
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| Protein GI | 159042867 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 37 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.421668 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCCATAA AGCTAGGCAT CGAACTGGAT CTACATGAAT TGGGGCTTCT CTCCCCAACT
GGATACTATA TCGGCCTTCA TATCCGGTTC GCCGCCCCTC TGCTGGACTA CCAGACCTAT
CCACAAGAGT GGAAGGATCG CTACACCGAA CAGGCCTATG CGCTGCGCGA CCCACTTCTC
GCCTGGGGCT TTGGAATGAC CGGGGCCACC CGGTGGAGCG AGATCGGAAT CCCGGATCCG
TTCGGCATCC TCGACGATGC GGCGCGGTTC GGGCTCAACT ATGGTGTCGC CGTCTCTTGC
GGCGAGATCA GTTCACGGAC CATCGCCGGA GCTGCCCGGT CGGACCGTGA GTTCACGGAT
GACGAGATAT CGGCCATCCA GACGATCGTC TTGCGGCTTC ACGACACCAC GACGCCGCCG
GACAGCCTCA CCAAGGCACA GATCGAGGCT CTCGGCCACA TTGCGGCCGG GGACCGACAT
ACAGCGGCCG CTGCCAAACT CGGTATCTCC GAAAGTGCGT TGAAAGCTCG CCTCACGGCG
GCGAGACAGA AGCTGATGGC ACGTACCACA GCCGAAGCCA TTCAACGAGC GAAGGACTAC
AGGCTGCTAT AG
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| Protein sequence | MSIKLGIELD LHELGLLSPT GYYIGLHIRF AAPLLDYQTY PQEWKDRYTE QAYALRDPLL
AWGFGMTGAT RWSEIGIPDP FGILDDAARF GLNYGVAVSC GEISSRTIAG AARSDREFTD
DEISAIQTIV LRLHDTTTPP DSLTKAQIEA LGHIAAGDRH TAAAAKLGIS ESALKARLTA
ARQKLMARTT AEAIQRAKDY RLL
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