Gene Dshi_0200 details

Gene Information

• Locus tag: Dshi_0200
• Symbol: rnc
• ID: 5712125
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dinoroseobacter shibae DFL 12
• Kingdom: Bacteria
• Replicon accession: NC_009952
• Strand: +
• Start bp: 199101
• End bp: 199790
• Gene Length: 690 bp
• Protein Length: 229 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 641266095
• Product: ribonuclease III
• Protein accession: YP_001531550
• Protein GI: 159042756
• COG category: [K] Transcription
• COG ID: [COG0571] dsRNA-specific ribonuclease
• TIGRFAM ID: [TIGR02191] ribonuclease III, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 29
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 41
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGAAGCTGT CCAAGGAGAT TTCCGCGTTT TGCGACCGGA TCGGGCATCG GTTTGACCGG 
CCCGAGCTTC TGGTGCGGGC CCTGACCCAT GCCTCGCGCA GCACCGCCGG GCGCAGCGAC 
AATCAACGGC TGGAATTCCT CGGCGACCGG GTGCTCGGCC TGGTGATGGC CGAGGCGCTG 
CTGGAGGCGG ACCCGCAGGC CCGCGAGGGC CAGTTGGCGC CGCGCTACAA CGCGCTGGTG 
CGTAAGGAGA CCTGCGCCGA GGTCGCCCGC GAGATCGGGC TGGGCGATGT GTTGCGGCTG 
GGCAGGTCGG AGATGCTGAC CGGCGGGCGG CGCAAGGACG CGCTGCTGGG CGACGGGATG 
GAGGCGGTGA TTGCCGCCGT CTACCGGGAT GCGGGGTTCG AGGCGGCCAA GGCGCTGATC 
CTGCGGCTCT GGGGCAAGCG GATCGGGGCA GTGGAGGCCG ATGCCCGCGA CCCCAAGACC 
GCGTTGCAGG AATGGGCGCA GGCGCGCGGC CTGCCCCCCC CGGCCTATAT CGAAAGTGCC 
CGGAGCGGGC CGGACCATGC GCCGGTCTTC ACGATCTCGG CCCGACTTGA GACCGGCGCG 
TGCGCCGAGG CGCAGGCGGG CAGCAAACGA CAGGCGGAGC AGGCGGCGGC GAAGGCCCTT 
CTGGCCCAGG TAGAGAGCAA TCATGACTGA 

 

Protein sequence

MKLSKEISAF CDRIGHRFDR PELLVRALTH ASRSTAGRSD NQRLEFLGDR VLGLVMAEAL 
LEADPQAREG QLAPRYNALV RKETCAEVAR EIGLGDVLRL GRSEMLTGGR RKDALLGDGM 
EAVIAAVYRD AGFEAAKALI LRLWGKRIGA VEADARDPKT ALQEWAQARG LPPPAYIESA 
RSGPDHAPVF TISARLETGA CAEAQAGSKR QAEQAAAKAL LAQVESNHD