| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0138 |
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| Symbol | hlyD |
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| ID | 5711606 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 135882 |
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| End bp | 137189 |
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| Gene Length | 1308 bp |
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| Protein Length | 435 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641266033 |
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| Product | type I secretion membrane fusion protein |
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| Protein accession | YP_001531488 |
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| Protein GI | 159042694 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 55 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGGAC CCGCGGCCAA GAAATTTCCC GCCCGGCGGC AGCTCTTGAT CGGTGGGATT
GCCCTCGCGA TCCTGGTCGG CGGCTTCGGC AGCTGGTCGG TGATGGCCAA TATCGCCGGC
GCGATCATCG CCCCCGGTCA GATCGAGGTG GACCAGAACC GCCAGGTGGT CCAGCACCCT
GATGGCGGCG TGGTCCAGCG CATCGCCGTG GACGAGGGCG ATACGGTGGC GACCGGCGAC
CTGCTGATCC AGCTCGATCC GACGCTGTTG CAAACCGACC TCTCGATCGT CGAAGGACAA
TTGTTCGAAC TGATGGCACG GCGGGCGCTG CTCGTGGCCG AGCGCGACGG TCAGGAGGAG
GTGATCTTCG ACGAGGAACT CCTGCTGGTT TCGGCGACCA GCCCGGAGGT CGCGGATGTC
ATGGACGGCC AGCGGCGCCT GTTCGAGGCG CGCAACACCT CCGTCGAGAC CGAAACCGAA
CAGCTGACCC GGCGCCGGGC CCAGATCGGC AACCAGATCG AGGGGATCGA GGCCCAGCAG
ACCGCCCTGA CCCAGCAACT CGACCTGATC GAGCAGGAAC TTGCGGATCA GCAGAGCCTG
CTCGACCGTG GCCTGGCCCA GGCCTCGCGG GTGCTGTCGC TGCAGCGGGA GCAGGCGCGG
CTGTTGGGGT CGGTGGGCGA GTTGACCGCC TCCAAGGCTG AGTTCGAGGG GCGGCAGACC
GAAATCGACA TCGAAATACT GAAACTGTCG ACCTCGCGCC GGGAGGAGGC GATTTCCCGG
CTGCGCGACA CGCAAGCCCA GGAATCGGAA CTCAAGCAGC AGCGCCAGGC CTTACGCGAA
CGGCTCAGCC GTCTCGATAT CCGCGCGCCA CTCGGGGGGA TCGTCTATGA CCTGTCGGTT
TTTGCCGAAC GCTCGGTGAT CCGCCCGGCG GAACCGGTGC TCTATATCGT GCCGCAGGAC
CGGCCCTTGA TCATCACAAG CCGGGTCAAT CCGATCAACG TGGACGAAGT CTATGTGGGC
CAGGAGGTGA ACCTGCGGTT TTCGGCCTTC GACCAGCGGC TGACACCGGA GTTGAAGGGC
AAGGTCGTGA GCGTCTCGCC GGATGCCTTC GTGGACGAGG CGACCGGCGC ATCCTTCTAC
CGGGTGGAAA CCGCGCCGCA GGAAGGCGAG ATGGAGAAGC TGGAAGGGCT CGACCTGATC
CCCGGCATGC CGGTAGAAGC ATTCATCCGC ACCGCGGACC GCACGCCGAT CGAGTATTTC
GTCAAACCGC TGAGCGATTA TTTCAACCGC GCCTTCCGGG AAGGCTGA
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| Protein sequence | MTGPAAKKFP ARRQLLIGGI ALAILVGGFG SWSVMANIAG AIIAPGQIEV DQNRQVVQHP
DGGVVQRIAV DEGDTVATGD LLIQLDPTLL QTDLSIVEGQ LFELMARRAL LVAERDGQEE
VIFDEELLLV SATSPEVADV MDGQRRLFEA RNTSVETETE QLTRRRAQIG NQIEGIEAQQ
TALTQQLDLI EQELADQQSL LDRGLAQASR VLSLQREQAR LLGSVGELTA SKAEFEGRQT
EIDIEILKLS TSRREEAISR LRDTQAQESE LKQQRQALRE RLSRLDIRAP LGGIVYDLSV
FAERSVIRPA EPVLYIVPQD RPLIITSRVN PINVDEVYVG QEVNLRFSAF DQRLTPELKG
KVVSVSPDAF VDEATGASFY RVETAPQEGE MEKLEGLDLI PGMPVEAFIR TADRTPIEYF
VKPLSDYFNR AFREG
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