| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0025 |
|---|
| Symbol | chrR2 |
|---|
| ID | 5711647 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 29143 |
|---|
| End bp | 29814 |
|---|
| Gene Length | 672 bp |
|---|
| Protein Length | 223 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641265919 |
|---|
| Product | transcriptional activator anti-ECFsigma factor |
|---|
| Protein accession | YP_001531375 |
|---|
| Protein GI | 159042581 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3806] Anti-sigma factor |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.322497 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.142099 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTGA ACGCGGATTT CACCCGGCGC GTGGTGGTGC GCCCCGAGGA TTACGCCTGG
GTCGACAGCC CGGCCAGCGG GGTGCAGCGG ATGATGCTGG ACCGGATCGG CGACGAGGTG
GCGCGGGCCA CCAGCCTCGT CCGTTTCGCC CCCAACAGCC AGTTCGACGC CCATAGCCAT
GGTGGGGGCG AGGAGTTCCT CGTGCTGGAG GGGGTGTTCT CGGATGAGCA TGCGGATTAC
CCGGCGGGGT CTTACGTGCG CAATCCCATC GGCACCGCCC ATACGCCCCA TATCGGGCCC
GAGGGCGCGA CGATCCTGGT GAAACTGCAC CAGTTCGACC CGGAGGACAC CGAGCAGAAG
GTCATCGACA CCCGCGTGGC GGCGTTTCTG CCGGGCGCCG CGCCGGGGCT GAGCGTGCTG
CCGCTGCATA CGGTGCCGGG GGAGTCGGTG GCGCTGGTGC GTTGGGCGCC TGGCACGCGG
TTTGCCGCGC ATCGCCATTG GGGCGGGGAA GAGATCTTCG TGCTGGAGGG GGTGTTCCAG
GACGAGCATG GGGATTACCC GGCGGGCAGC TGGCTGCGCA GCCCGCACCA GTCCGAACAT
GCGCCGTTCT CGGAGGAGGG CTGCCTGATC TACGTCAAGA CCGGGCATTT GCCGATGCAG
GAAGCGGCCT GA
|
|---|
| Protein sequence | MKLNADFTRR VVVRPEDYAW VDSPASGVQR MMLDRIGDEV ARATSLVRFA PNSQFDAHSH
GGGEEFLVLE GVFSDEHADY PAGSYVRNPI GTAHTPHIGP EGATILVKLH QFDPEDTEQK
VIDTRVAAFL PGAAPGLSVL PLHTVPGESV ALVRWAPGTR FAAHRHWGGE EIFVLEGVFQ
DEHGDYPAGS WLRSPHQSEH APFSEEGCLI YVKTGHLPMQ EAA
|
|---|
| |