| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_3029 |
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| Symbol | |
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| ID | 5695888 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | - |
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| Start bp | 3634667 |
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| End bp | 3636832 |
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| Gene Length | 2166 bp |
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| Protein Length | 721 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641265645 |
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| Product | polynucleotide phosphorylase/polyadenylase |
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| Protein accession | YP_001530909 |
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| Protein GI | 158523039 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
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| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000283556 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGAAC ACGTATTTGA AGCAACCGTA AACGGCAAGC CGTTTACTAT TAAGACCGGC
CGGCTGGCCA AACAGGCCGC CGGCGCCGCC CTTGTCCAGT ACGGGGAAAC CATCGTCCTG
GTGACGGTGG CGGCGGCTAC TGAGCCCAAG GAAGACGCGG ATTTTCTGCC GCTTTCCGTG
GAGTATCAGG AGAAAATATA CTCCGCCGGC CGAATTCCGG GCAACTACTT TCGCCGGGAG
ATAGGGCGGC CCAGTGAAAA AGAGACACTG ACCTGCCGCC TGACCGACCG ACCCATACGG
CCTCTGTTTC CCGCCGGATA CACCTTTGAA ACCCAGGTCA TCACCACGGT GCTGTCCATG
GACCGGGAAA ACGATCCGGA CGTGCTTTCC ATTGTGGGCG CGTCCGCGGC CCTGACCATT
TCGGATCTTC CCTTTGACGG TCCCCTGGCC GCGGTCCGCG TGGGCCGCCT GAACGGCACC
CTGGTGGCCA ACCCCACCAA CACCGAGCTG GACGACTGCG ATATCAATAT TGTGGTGGCG
GGATCGCGCT CCGGCGTGGT CATGGTGGAA GGCGGCAGCA ACGTGGTGAG CGAGGCCGAG
ATGCTGGAAG CCATCTTTTT CGGCCACAAC GCCCTTTTGC CGCTGATCGA TATTCAGGAC
CAGATGCGAA ACGCCTGCGG AAAGCCCAAG CGGGTCATCG TGCCGCCGGA AAAAGACACT
GAGCTGGAGA CCCGAATTGC GGAGCTGGTG GGCGACGCCG TTGCCCAGGC AGTGACGGAG
CCTGAAAAGG ACGCCCGGAA AAGCGCGCTG TCCAAGGTGA GGGAAAACCT GTTCCAGGGC
CTTGGCGAGG CCTTTGCCGA CCGGAAAAGG GAGATCAAGG GCCTTTTTTC GGACCTGGTC
AAGAAGGTGT GCCGGGACAT CGTGCTCAAC CAGGGCCGGC GCATTGACGG CCGAGCCTTT
GACGAGGTCC GGCCCATCAG CTGTGAGGTG GGTGTGCTGC CCAGAACCCA CGGCAGCGCC
CTGTTCACCC GGGGCGAGAC CCAGGTGCTC GGCGTGATGA CTCTGGGGTC GGGCCATGAT
GAACAGCGGG TGGAGACCCT GTTCGGGGAC GAGACCCGGC CCTTCATGCT GCATTACAAT
TTTCCGCCCT TCTGCGTGGG CGAGGTCAAA CGGGTTATGG GCCCCAGCCG CCGGGACATC
GGCCACGGCA ACCTGGCCCA CCGGGGCATC TCCTATGTGC TGCCCGACAA GGAGACCTTT
GATTACACCA TCCGGCTGGT TTCCGAAGTG CTCGAATCCA ACGGTTCCTC TTCCATGGGA
ACCGTTTGCT CCTGCATCCT GGCTCTGATG GATGGCGGCG TGCCGATCAA GGCCCCGGTG
TCCGGTATCG CCATGGGCCT GGTGGCTGAC GGCGACAAGG TGGCCGTGCT TTCCGATATC
CTTGGTGATG AAGATCATTT CGGCGACATG GACTTCAAGG TTACAGGCAC GGAAAAGGGC
ATTACCGCGC TTCAGATGGA CATCAAGATC AAGTCCCTTT CCCGGGAGAT TCTGGAAAAG
GCCCTGCACC AGGCCAAGGA TGGCCGTATC CATATCCTGG GCAAGATGCT GGAGGCCCTC
TCCCATTACC GGGACGATAT CTCTCCGTAT GCGCCCAAGA TTTACATCGT CAAGATTCAT
CCCGACAAGA TTCGGGAGAT CATCGGTCCG GGCGGCAAGG TGATTCGTGA GCTTCAGGCC
ATGAGTAACA CCCGCATCGA GGTGGATGAT TCAGGCACCG TCAAGATTGC CGCATCCACG
GAAGAAGAGG CCAGAATCGC CATCAAGGCG GTGGAGGATA TCGGAAGGGT GCCCGAGCCC
GGCGAGATAT ACGAGGGCGA GGTGGTTCGG ATTACCGATT TTGGCGCTTT TATCCAGATC
AAAAACGGTA CCGACGGGCT CTGTCATATT TCGGAGCTGG AACACCACCA TGTCAAGAGC
GTTACCGATG TGGTCAAGAT GGGCGACAAG GTGAGGGTCA AGGTGCTGGA GGTCAGCCCT
GAAGGCAAGA TCCGCTTGAG CCGAAAGGCC CTGCTGCCGG CCCCTGAAAA GGGCGAGGAG
GACGAGAAAA GCGCCCCCCG TTCACGTCGG CCCGGCGGCA ACTCCGACCG GCGAAACAAC
AGGTAG
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| Protein sequence | MTEHVFEATV NGKPFTIKTG RLAKQAAGAA LVQYGETIVL VTVAAATEPK EDADFLPLSV
EYQEKIYSAG RIPGNYFRRE IGRPSEKETL TCRLTDRPIR PLFPAGYTFE TQVITTVLSM
DRENDPDVLS IVGASAALTI SDLPFDGPLA AVRVGRLNGT LVANPTNTEL DDCDINIVVA
GSRSGVVMVE GGSNVVSEAE MLEAIFFGHN ALLPLIDIQD QMRNACGKPK RVIVPPEKDT
ELETRIAELV GDAVAQAVTE PEKDARKSAL SKVRENLFQG LGEAFADRKR EIKGLFSDLV
KKVCRDIVLN QGRRIDGRAF DEVRPISCEV GVLPRTHGSA LFTRGETQVL GVMTLGSGHD
EQRVETLFGD ETRPFMLHYN FPPFCVGEVK RVMGPSRRDI GHGNLAHRGI SYVLPDKETF
DYTIRLVSEV LESNGSSSMG TVCSCILALM DGGVPIKAPV SGIAMGLVAD GDKVAVLSDI
LGDEDHFGDM DFKVTGTEKG ITALQMDIKI KSLSREILEK ALHQAKDGRI HILGKMLEAL
SHYRDDISPY APKIYIVKIH PDKIREIIGP GGKVIRELQA MSNTRIEVDD SGTVKIAAST
EEEARIAIKA VEDIGRVPEP GEIYEGEVVR ITDFGAFIQI KNGTDGLCHI SELEHHHVKS
VTDVVKMGDK VRVKVLEVSP EGKIRLSRKA LLPAPEKGEE DEKSAPRSRR PGGNSDRRNN
R
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