Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dole_3013 |
Symbol | |
ID | 5695872 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfococcus oleovorans Hxd3 |
Kingdom | Bacteria |
Replicon accession | NC_009943 |
Strand | - |
Start bp | 3615549 |
End bp | 3618080 |
Gene Length | 2532 bp |
Protein Length | 843 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641265629 |
Product | MscS mechanosensitive ion channel |
Protein accession | YP_001530893 |
Protein GI | 158523023 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3264] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGACAACGC GACATAATGC GCGACGGTGC CTGGCGGCCG CGGTCCTGGT CCTGGCGCTG GTGATGCTGT CTGCCGTCCG GGGGAACACC CAGCCGCCGG CGGCGGACCC CGTGGCCGAC AAGGCTCCGC CCGCCTCTCT GGCGGCCTCC ATAGCGGCGT CTCTGGCCAG TGAAGAGCGC CTGGTGGAAG CCCTGCAAGC GGAAAAGCGT CAGGCCGACC AGTCGGCTTC TGTTTTTGCG GACCGGCTGG ACGCCTACCG GACCCAGCAT GCCGTGTATG CCAACATGCT GGCCCTTCAC ACGGTGTCCG CCACGGACCT GGAGGCGGCC GGCCGTCATG TCCAGTCGTC CCTTGTGGAG ATTCACGAAC AGCAGGCCCG GGTAAGAAAG AACCTGGAAA CGGTGGAACA GTATCGCTCC GGCATCAAAG ATCAGGTGGC GGTCAACCAG GCCTACCTGG CGGAACTGAC CGCCGGGTCT TCTAAGGGCA AGGATGCCGG GACCGTTGAG GCCATTCAAC GGCTGATCGA CCTGGTGAAC CGGAAACAGG CCCTGCTGGA GGGGCTGCAC CAGATTTATG CCACCCGTCT GACGGACCTG AAGACCATGG AGGGAATGCT GACCGCCCTT TCGGGAAAAC TGGAAGGCCG GGTCCAGGAA GCCCGGAAGC GTGATTTTTT TTCCCGGTCC ACAGGGTTTC CGATCCAGGG CGGATGGGAA GGTCTCCGTC AGGAGATGTC GCAAGTGGCC GATGTGGCAC GGTCCCGGTT CTCCGTTACC TACCTGGTCG AAGAGGGCCC TCTGCTCTGG CGGTCGCTTC GCCAGGTGCT GGCCTACGGT GTGCTGCTGG TGCTGCTGGC GGCCATGGGA ATGGCCCGGC TGGCCGCATT CCAGCGGCGG ATTGATCAGG AAAAGGCGTT TGCGTCCTGT ACCGCGTTTC AGGCGGTTCT TTATATGTTC TCCCGGTCGA TGTGGCTGCT GCTGATCACG GCACTGTTGT TCCTGTACAT GCAGGCCGGT GACTATCTAC CTTCTCCGCT GATTGTTTTT ATTTTTTCCC TGGCCCGTAT CTTTCTGGTT ACCCGGTGGG TGATGGATGC CGTTGACTGT GCCCAAAAGG GCGAAAAACC GCTGGCTCTG CCGGCCAGGG CGCGTCTTGT CCGCCGGGCA TGCCAGGGTG TGCGGCTGTT CGGCGTCGTA TACGCGACCT TGCTTTTTCT GGCGCCGGAA GCCGGGGGCC TTCTGTTCTT GACCCGCCTG CTGTTTGAAA TCGGGGCACT GGTCTTTGCG CTTGTTTTCT GGCGCGGGCG CAAACAGATA CCGGACCGGG AGGCGGCTTC AGCCGCTTCC GTTAAGCACC GGCTTTCGTT TGGGTGGGCG GTGAACGTGG TCTGCGTGGG CGGCCTGGCG CTGGAGCTGG CCGGCCACGG GCCCATTGCC CTTTACTGGT ATATCTCCTG GGGAAGGACA CTGGTCATTG CCCTGTGGGT GGGACTGGTT TACGCGGCCC TTGGCGAACT GCGCCGCGCT TACCAGGTGG ACCCGGCAGC CAGCAATGAA ACAGCTGAAG CCCAGGGATC CCCTGTGTGG TGGATACTTA TCCGGCTGGG ACAGGCGGCC CTGGTGGCGG CAAGCGTGGT GGCCCTGATT GTCGCCTGGG GCGGAGGCCA GGATGCGCTG ATGGCCATGT TCGGCCTTCT TCATCATCCG TATGAGGTCG GTACCCTCTC TTTCAGGATC ATCGGTTTTA TTTATGCCGT GGTGGCCCTG TTTATCACCC ACATGATCGC CGGGGCCTGG CGATACCTGT TTGAGCGCCG GGTCCTTCGG GGCAGCGGCA TGACCCAGGG GGCGCAGGAG TCGGTGGTCA CCATCACGAT CTACATTGTC TGGGCCGTTG GTATCCTGGC CGCCCTTCAT GTGGCCGGGT TCAACACCAC CTCCCTGGCC GTGGTCCTGG GCGCCATCGG CATAGGCCTG GGGTTCGGTC TGCAGAACAT TTTCAACAAC TTTGTCAGCG GCCTGATCCT CCTGTTTGAA CGGCCCATTC AGGTGGGTGA CGACATCGAG GTGGACGGCA CCTGGGCCAC CGTGAAAAAG ATCAATGTGC GCGCCACCAT TGTGCAGACC TACGATAACG CTTCTTTGAT CATTCCCAAT GCCGAGCTGA TCAGCAACCG GGTCATCAAC TGGAGTTTTC AGGACAAGCG GTTGCGCAGA AAGGTTGCCG TGGGCGTGGC CTACGGCTCC GACGTGGAGC TGGTGCGCAC CACCCTGCTG GAGGTGGCCG CCGGTATTCC CCGGGTGCTT AAAACACCGA AGCCGGATGT GGTGTTCAAG GATTTCGGAG ACAGCTCGCT GGTTTTTCTG CTTCGCTTCT GGACCCACGT GGCCTATTTC TACGCGGTGG AGACCGAGGT CCGGTTCGCC ATTGACCGGC TTTTCCGGGA ACGGGGCATC ACCATCGCCT TTCCCCAGGT GGATGTGCAC CTTCATAGCG AGACGCCGCC CCCCTCGACC GACGACGAAT AA
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Protein sequence | MTTRHNARRC LAAAVLVLAL VMLSAVRGNT QPPAADPVAD KAPPASLAAS IAASLASEER LVEALQAEKR QADQSASVFA DRLDAYRTQH AVYANMLALH TVSATDLEAA GRHVQSSLVE IHEQQARVRK NLETVEQYRS GIKDQVAVNQ AYLAELTAGS SKGKDAGTVE AIQRLIDLVN RKQALLEGLH QIYATRLTDL KTMEGMLTAL SGKLEGRVQE ARKRDFFSRS TGFPIQGGWE GLRQEMSQVA DVARSRFSVT YLVEEGPLLW RSLRQVLAYG VLLVLLAAMG MARLAAFQRR IDQEKAFASC TAFQAVLYMF SRSMWLLLIT ALLFLYMQAG DYLPSPLIVF IFSLARIFLV TRWVMDAVDC AQKGEKPLAL PARARLVRRA CQGVRLFGVV YATLLFLAPE AGGLLFLTRL LFEIGALVFA LVFWRGRKQI PDREAASAAS VKHRLSFGWA VNVVCVGGLA LELAGHGPIA LYWYISWGRT LVIALWVGLV YAALGELRRA YQVDPAASNE TAEAQGSPVW WILIRLGQAA LVAASVVALI VAWGGGQDAL MAMFGLLHHP YEVGTLSFRI IGFIYAVVAL FITHMIAGAW RYLFERRVLR GSGMTQGAQE SVVTITIYIV WAVGILAALH VAGFNTTSLA VVLGAIGIGL GFGLQNIFNN FVSGLILLFE RPIQVGDDIE VDGTWATVKK INVRATIVQT YDNASLIIPN AELISNRVIN WSFQDKRLRR KVAVGVAYGS DVELVRTTLL EVAAGIPRVL KTPKPDVVFK DFGDSSLVFL LRFWTHVAYF YAVETEVRFA IDRLFRERGI TIAFPQVDVH LHSETPPPST DDE
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