Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dole_2418 |
Symbol | |
ID | 5695266 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfococcus oleovorans Hxd3 |
Kingdom | Bacteria |
Replicon accession | NC_009943 |
Strand | + |
Start bp | 2916172 |
End bp | 2918655 |
Gene Length | 2484 bp |
Protein Length | 827 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 641265024 |
Product | TPR repeat-containing protein |
Protein accession | YP_001530299 |
Protein GI | 158522429 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3063] Tfp pilus assembly protein PilF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACCTGT CTTTTCTTCG TCACCGCTGG CAGGCCGGCG CCGTGCTGAT TCTATTGGCC GCAACAGCCG TTCTGATCTA TTCCAACACA CTGACCGCGC CGTTCACCTT TGACGACGGC CACAACATTC TGGATAACCT GAATATCCGC ATGACCGGGC TTTCCATCGA CAGCCTTATC GACGCGGCCA CCGTCCAGAC CCGGCGGCCT GTTGCCAGCC TCACCTTTGC GCTCAACTAC TATTTTCACG GTTATGACGT GACCGGGTAT CACGTGGTCA ACATCGCCAT CCACATTCTT GCCGGCTTTC TGATGTTCCT GGTGGTCCGC CACACACTGG GCCTTACGGG CAATGAAAAA AAAGAGCTGA TCGCTGCCCT GGCAGCCCTG GTCTGGCTCG TCAACCCGGT CCATACCCAG TCAGTGACGT ATATCGTCCA GCGCATGACC GCCCTGGCCA CCCTCTTTTT TCTTTTCGCC CTCTACCTTT ATATAAAGGG CCGGCTCCGG CAGCGGACCG GCCGCCCCCT TGGCATTCTC TTTTTTGCCC TCTGCGGCCT GTCCGGCATC CTGGCTGTGC TTTCCAAGCA GATCGCCGCC ACCCTGCCCT TTTTTGTTCT GGTCTATGAG TGGTATTTTT TCCAGGACCT GGATCGGGCA TGGATTAAAC AACAGGCAAA GTGGATCGGT GGAGCCGTGT TTATCATTGG CGCGCTTGCG GCAATATACC TGGGCGCCTC CCCGATAGAA AAAATCATGG CCATGTACGA CTCCCAGGAC TTTACCATGG GCCAGCGGCT TTTAACCGAG CCCAGAGTAA TATTTTTATA CCTTTCGCTG CTCTTTTTTC CGTACCCGGC CCGGCTCAAT CTGGACTATG ACTTTCCCGT GTCTGTCTCC CTGATCGACC CGTTCACCAC CCTGGTCTCC ATCCTCGGCC TGATCGCACT GCTGGGGGCC GCTGTTGTCA CGGCAAAAAG ACAGCGGCTG GTCTCCTTTG CCATTGTCTG GTTTTGCGGC AATCTGGTAA TCGAGTCCTC TTTTATCGGT CTGGCCCTGG TGTTCGAGCA CCGCACCTAC CTGCCCTCTG TGTTTGTAGT CGCGGCCCTG GTCTGGGCCG CCATTACATA TATTCGGCAC AGGCCCCTGG TCATTGGGTT TCTCTGCGCC GTCACAATGA TCTTCGGCTG CTGGACATTT CAGAGAAACA CCATCTGGGC CGATGATACG GCCCTGTGGC GGGACGTGAC AGAAAAATCC CCCAACCTGG CCCGGCCCTG GAACAACCTG GGCCTGGCCC TGAAAAACCA GGGTCAGACG GACCAGGCCA TGGCCATGTA CAACAGAGCA ATCGAAATCG ATCCCGGCTA CATCCACCCT TACAACAACC TGGGTGCCCT GTTTCTGGAA ACCGGCCAAC CGGAAAAGGC CAGGCCCCTT CTTGAAAAGG CCATTGAGAC AGACCCCCTC TTTATGATGG CATACAGCAA CCTGGCCATT GCCTGCCACC GGCTCGGCGA CAGTGAAGCA GCCATGGCAT GGTGTGAGAA GGGATTACAA ATAAGCCCGA ATGACCTGGA AATACAAAAC ACGCTGGGCG TTATTCTGCT GGCCCAAAGA CGGGAGCAGG AGGCCGCCGT CCTGTTTGAA GCAGTGCTGC AGAAAGACCC GGGCCACACC GAGGCGCTGA TGAACCTGGC CCTGATTGCC GACAAACAGG GAGACCGGGA AAAAACCGCC GCCCTTCTTG AAAAAGCGAT CCGCCTGGAC CCGGCGTCGG CCGAAGCCCG GTATCATCTG GGCGAACTGC TGGCCCGCAC CGGCAATCCC GACAACGCCA TGGCCCAGCT TGAGCAGGCC CTGCACCTGA AACCGGACCA TGCCCTGGCC CATAACGCCA TGGGAAATTT ATGGCTTCAG GCCGGAAAAA CAGACAGGGC CATCGACCAC TACCAAAAGG CCATCGCCAT TGACCCCGGA TTTGCCGCGG CCCACACCAA CCTGGCCGAT GCCCTGGTTC GAACCGGAAA GATCGACAGC GCCCTGCATT ACCTTGAAAC CGTGGCCGCC TCCCGTCCGG ACGATGCCGG CCTGCTGCTT AAAACCGGCA TCCTGCACCA GCAGAACGGA AACCTCCCGG CTGCCGAGAA CCTTTACCAA AAAGCCCTGA GCATAGACCC CGGCTGCACC GCCTGCCTGA ACCGGCTGGG CATGATTCAC GCCCAAGCCG GACGGCTCGA TAAGGCTGCC GGCTGTTTTG AAGAACTGGC CCTGCTGGTG CCGGACAATC CCGTGATCCA TTACAACCTG GCCTGCCTCT ACGCCCGGCA GAACGAGGTG GAGCCAGCCC TGACAAATCT AAAAAAAGCC CTGGATACCG GGTATGACAA CCTGGAACAA ATCCGCACCG ACAGAGATCT GGACAATATC CGCGACACCG GCTTTTACAA AGACCTGGTG CGAGTGAAGG AGCAGGGGCA ATGA
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Protein sequence | MNLSFLRHRW QAGAVLILLA ATAVLIYSNT LTAPFTFDDG HNILDNLNIR MTGLSIDSLI DAATVQTRRP VASLTFALNY YFHGYDVTGY HVVNIAIHIL AGFLMFLVVR HTLGLTGNEK KELIAALAAL VWLVNPVHTQ SVTYIVQRMT ALATLFFLFA LYLYIKGRLR QRTGRPLGIL FFALCGLSGI LAVLSKQIAA TLPFFVLVYE WYFFQDLDRA WIKQQAKWIG GAVFIIGALA AIYLGASPIE KIMAMYDSQD FTMGQRLLTE PRVIFLYLSL LFFPYPARLN LDYDFPVSVS LIDPFTTLVS ILGLIALLGA AVVTAKRQRL VSFAIVWFCG NLVIESSFIG LALVFEHRTY LPSVFVVAAL VWAAITYIRH RPLVIGFLCA VTMIFGCWTF QRNTIWADDT ALWRDVTEKS PNLARPWNNL GLALKNQGQT DQAMAMYNRA IEIDPGYIHP YNNLGALFLE TGQPEKARPL LEKAIETDPL FMMAYSNLAI ACHRLGDSEA AMAWCEKGLQ ISPNDLEIQN TLGVILLAQR REQEAAVLFE AVLQKDPGHT EALMNLALIA DKQGDREKTA ALLEKAIRLD PASAEARYHL GELLARTGNP DNAMAQLEQA LHLKPDHALA HNAMGNLWLQ AGKTDRAIDH YQKAIAIDPG FAAAHTNLAD ALVRTGKIDS ALHYLETVAA SRPDDAGLLL KTGILHQQNG NLPAAENLYQ KALSIDPGCT ACLNRLGMIH AQAGRLDKAA GCFEELALLV PDNPVIHYNL ACLYARQNEV EPALTNLKKA LDTGYDNLEQ IRTDRDLDNI RDTGFYKDLV RVKEQGQ
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