| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_2046 |
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| Symbol | |
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| ID | 5694889 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | - |
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| Start bp | 2486741 |
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| End bp | 2489470 |
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| Gene Length | 2730 bp |
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| Protein Length | 909 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 641264647 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_001529927 |
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| Protein GI | 158522057 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGGATGG ATGCGGCATA TAACACCATT GCCGGATTTG TGCGGGGGAT GCCCTTTCTA
TCTTCTGCGG ACGGCCGCCT GATCGCCACA TCCGCTCCGG GCCTGGCCGA TACGCTTTAT
GAATATGACG AGTTGGGCAA CATGGTCCGC TCCGGTCTGG ATGTTAATGA TAACGGCGTG
CTGGATGACG GATCGTCAGA CCGCATTCAG GAAAGTGTCA CTCAATACTC CAACGACGGC
ACCGACTGGT GGCAGGAAAC CACCGGCAAA ATTTTTGCCG TCACCGGCAG CAGCACCCCC
ACCACCACGG GCATTCAAAA AACCAGGCTC ACCGGCCTGG GCGCAAACGG CCTTGTCAAT
GAGACCGTTT CTACTGACAT TAACGGCAAC CAGACCGTTG CCCGGACCGT TATCGACCCT
GCCACCCAAA CTGTAACGCA GACAGTGGAC TACCCGGATG CATCCTTTAA CGAAGTTACT
GTCACGACAA ACGGACTGCT GCAATCCCGG CAGAGCAAAA CCGGTGTGAC CACCACCTTT
TCCTGCGATG GACTGGGCCG CCGGACCGGG GCCACCGATT CCCGCACCGG CACCACTGTT
ACCCATTACA ACAGCCTGGG CCAGGTGGAT TATGTGGAAG ATGCCGCAGG CAACCGGACT
ACATTCATTT ATGATGCAGC CGGCCGCCGT GAAACAGAGA CCAATGTCCG GGGCAAAACC
ATCCGCTACG CCTACAACAG CCTCGGACAA CTGACGTATA AATGGGGCAG CGCGGCCGAA
CCGGTAAAGT TTGTGTATGA CGCTTACGGC CAGATGATCC AGATGCACAT GTTCCGCAAC
GGCTCTGGTT GGGACGGGAC AGAGTGGCCA TCAGGTTCCA CCGGAGATCC AGATATCACC
ACCTGGACCT ATCAGCCGTC CACCGGCCTG CTCACTGCCA AGACCGATGA TGAGGCCAAA
TCCACGGCCT ACACCTACAC CGCCGCCAAC CGGCTGGCTA CCCGCACCTG GGCACGGGAT
AACGGCACCC TTGTCACCAC CTACACCTAT GATCTGAATA CCGGGGAACT CACGGGCATT
GATTATTCTG ACACCACCCC GGACGTGGCC TATGCCTACA CCCGGGCCGG GCAGGTGTAT
ACCGTGGACG ATGTTGTGGG CACGCGCACC TTTGCCTATA ATAGTGCCCT GCAACCCGTC
ACAGAAACCA TAGACGGCGC TTCCGGCGGG CTTTACAGCA AAACCATTAC CCGCACCTAC
GAGACCTCCG GCGTGGTTGG CCGGCCCACC GGGTTGAGCC TTACAGGCTA CAGCGTGGCC
TATGGGTATG AACCTTCCAC GGGCCGGTTT AGCGGCGTTG CCTGGAACAC CGGGGCCGGA
GAAAAGACGG CCACCTATGC GTATGTTGCA GACTCTGACC TTGTCGACAC CCTGACAATG
GAGAATCTGG TCACGGATTT TGCCCATGAG CCGAACCGGG ACCTCAAAAC CCAGGTTAAG
CATACCCACA ACGGCACAGG AGTGGTGCAG TATGATTATA CTCACGACAG CCTTGGCCGG
CGCAAGACCA TGGACCTGAC CCCGGACCTG CCGGATACCC TGGTCGAGGC AAATACCACC
TACACGCCAA ATAATTTAAA CCAGTATGAT GCCATTGAAA AAGGCGGCGT CACCGACAAC
CCGGTCTATG ACGATGACGG CAACCTTACC CACCAGCAGG GCATGGTTTA TGCCTGGAAC
GGAGAAAACC GCCTCATCTC CGTGACGCCC GCCACTCCGG TGGACGGAGA TAAAAAAGTG
GAGTTTGTCT ACGACTACAT GGGCCGAAGA GTGAAAAAGA CTGTCTATAC ATTCAGCGCC
GGCAGCTACC AGCTGTCAGC TGCCAGCTTA TTTGTCTATG ACGGGTGGAA CCTGATCCAG
GAGCTGGATG GCGCCGGAGC TGTGACAAAG TCCTATGTGT GGGGACTTGA CCTTTCTCAG
AGCGTGCAGG GTGCAGGAGG GGTAGGGGGC CTGCTGGCCA TGACCGACGG GGTGAATACA
TATCTGTATT GCTTTGATGC CAACGGCAAT GTGGGGCGCA TGGTCAATGC CGCGGACGGC
ACCGTGGCAG CGGCTTATGA ATACTCGCCG TTTGGCGGGC TGATTCATAA AAGCGGGGTT
ATGGCGGATG AGAATGTGTT TCGGTTCAGC ACAAAATATT GGGATGGGGA GAGTGGGCTG
TATTACTACG GATACCGGTA TTATGAGCCG GAGATGGGGA GGTGGGTGAG TAGGGATCCG
TTGGAGGAGG AGGGCGGATT TAATTTGTAT GGGTTTGTGG GGAATGATCC TATTAATATA
ATCGATCCCA AAGGACTGGT GGGCATAGGT GGTGGTGCCT ATTATGGGGT TGGTGCAGAG
GCATCTTATA GCAGTACAAC GTGTTGCCAG AGGAATATAT TATTCAAAGT TAAAGTGCTA
ACTATCTGTG GAGGAGGAGG GATTGGCCTT AAAGGAACAC CTCCTGTTGG CGTTACGGGT
GGTGGTATTT CATCTAGATC TGGATGTCCG CGAACTCGAT ACTATTTCAA ACATGAAAAT
ACTCTTATTG CACGTTCGGT AAATGTCCAA GGTGATAGTA AAGGACCATC TGCTGGGATC
GATGTTGGTG TTTATGGTGT ATCCACCACT TGGGTTTTTT GTTCGGATAC GGTTGTATCC
AAAAAGAAAA TAGGATGTTG TAATGATTGA
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| Protein sequence | MRMDAAYNTI AGFVRGMPFL SSADGRLIAT SAPGLADTLY EYDELGNMVR SGLDVNDNGV
LDDGSSDRIQ ESVTQYSNDG TDWWQETTGK IFAVTGSSTP TTTGIQKTRL TGLGANGLVN
ETVSTDINGN QTVARTVIDP ATQTVTQTVD YPDASFNEVT VTTNGLLQSR QSKTGVTTTF
SCDGLGRRTG ATDSRTGTTV THYNSLGQVD YVEDAAGNRT TFIYDAAGRR ETETNVRGKT
IRYAYNSLGQ LTYKWGSAAE PVKFVYDAYG QMIQMHMFRN GSGWDGTEWP SGSTGDPDIT
TWTYQPSTGL LTAKTDDEAK STAYTYTAAN RLATRTWARD NGTLVTTYTY DLNTGELTGI
DYSDTTPDVA YAYTRAGQVY TVDDVVGTRT FAYNSALQPV TETIDGASGG LYSKTITRTY
ETSGVVGRPT GLSLTGYSVA YGYEPSTGRF SGVAWNTGAG EKTATYAYVA DSDLVDTLTM
ENLVTDFAHE PNRDLKTQVK HTHNGTGVVQ YDYTHDSLGR RKTMDLTPDL PDTLVEANTT
YTPNNLNQYD AIEKGGVTDN PVYDDDGNLT HQQGMVYAWN GENRLISVTP ATPVDGDKKV
EFVYDYMGRR VKKTVYTFSA GSYQLSAASL FVYDGWNLIQ ELDGAGAVTK SYVWGLDLSQ
SVQGAGGVGG LLAMTDGVNT YLYCFDANGN VGRMVNAADG TVAAAYEYSP FGGLIHKSGV
MADENVFRFS TKYWDGESGL YYYGYRYYEP EMGRWVSRDP LEEEGGFNLY GFVGNDPINI
IDPKGLVGIG GGAYYGVGAE ASYSSTTCCQ RNILFKVKVL TICGGGGIGL KGTPPVGVTG
GGISSRSGCP RTRYYFKHEN TLIARSVNVQ GDSKGPSAGI DVGVYGVSTT WVFCSDTVVS
KKKIGCCND
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