Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dole_2012 |
Symbol | |
ID | 5694852 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfococcus oleovorans Hxd3 |
Kingdom | Bacteria |
Replicon accession | NC_009943 |
Strand | - |
Start bp | 2437967 |
End bp | 2438572 |
Gene Length | 606 bp |
Protein Length | 201 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 641264610 |
Product | peptidoglycan-binding LysM |
Protein accession | YP_001529893 |
Protein GI | 158522023 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1388] FOG: LysM repeat |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.340695 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCGGCA CTCTCAACAA CAACGGCAGG ACCATTCTTT TTGTGACCGC GGCATGCGCG GTTTTTATTA TTGTCGTCCT CGTTATCCTG TCGGTGGCCG GGCGTTCGTC CGTGTCTACC CAGGAATTTG CCGCGATGCA GCAGCGCGTC CAGGCCCTGG AAGCGGAAAC CAACCGCCTG GCCATTGCCC TGGAGACAAT GGATGCGCTT GCCCGGCAGG TCGATGCGTT TGATCAGATT ATCAAGGAAT CGGCAAAGCG GGAAACCGAT CTGCTGTTCA GAGTCAGCGA CCTTGAGGCA AAGGCGGGCA TTTCAAGAGC ACCGGCAACC GAGACCCCGG AGGAGGCTCC CGTTCCTCAA GCCGCTCCTC AGGCCGATCC TGAGACCGCC CCCCCGGCCA CCGTATCCGA CATGCCGGCC AAACCCGAAT CACCTGCCGT CCAGCCGGCT TCAGCAACCC CCGATGGATA TTACACAGTG GTCAAGGGCG ATACCACCTA CAGCATCAGC CGTAAGTTTG GTCTCACCGT GGACCAGCTC CTGGAGATGA ACAACCTGAA ATCCACAGAC ATCTTTCCGG GCCAGACGCT TAAAGTGAAG CCGTAG
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Protein sequence | MTGTLNNNGR TILFVTAACA VFIIVVLVIL SVAGRSSVST QEFAAMQQRV QALEAETNRL AIALETMDAL ARQVDAFDQI IKESAKRETD LLFRVSDLEA KAGISRAPAT ETPEEAPVPQ AAPQADPETA PPATVSDMPA KPESPAVQPA SATPDGYYTV VKGDTTYSIS RKFGLTVDQL LEMNNLKSTD IFPGQTLKVK P
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