| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_1944 |
|---|
| Symbol | |
|---|
| ID | 5694784 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | + |
|---|
| Start bp | 2353270 |
|---|
| End bp | 2354613 |
|---|
| Gene Length | 1344 bp |
|---|
| Protein Length | 447 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 641264542 |
|---|
| Product | aromatic hydrocarbon degradation membrane protein |
|---|
| Protein accession | YP_001529825 |
|---|
| Protein GI | 158521955 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG2067] Long-chain fatty acid transport protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGA CACTATGCGT TGCGGTATGT TTGGTTTTGG GAGTGATGTT GACGACGCCG
GCCGGCGCCA CCCACTTTGG CGACACCTTT GGTTTTTCGC CGGAGGGAAT GGCACTGGGG
AACGCCATGA CGGCAAAAGT CGATGACTGG TCGGCCGTGT ACTACAATAT TGCCGGGCTC
GGCCGTTCCC AACACCTGGT TAACGGCAAA AGCCAGCTTT TTCTGGGTTA CATAAACAAT
GCCCCGGATC TGGATATCGA GATTGTCAGG CGTGAAGCCG CCACCGGCGA TCGCCTGGCC
ACCAACGGGG ACAGGGACCT GGACACCGGG ACCATTGTTA TTGGCGGCGT GCTGGATATC
GGTACCCTTG TACATCTTCC CGAAATGGTA TCCTCGACCC GCCTGGGGCT TGCCATCGGC
CTTAACGATG ACCAGAGCGT GGTTAAAATA AACGACCTCG ACCCCCGCAC GCATAATTTC
ATGCGCTATG GCCGGGAATG CCAGCGCATG CTGATCACCA CCGGCATGGG ATTCGGATTT
TTACACGACA CCTTCGGGGT CGGCCTGGGC GTTACCTCCT TTTTTACCGG AGAGGGGACC
GCTCTCCTGG AACGTGTCGA GCTGCAGACG GAATCCCAAA GCCCGCCCGG GCAGGCCAAA
ATGGACCTCA AAATGGAACA GGCCCTGGTG ATGGGCGCCT ATTTCAGCCC CGGGAAACTG
TGGCGGTCCC TGGATACATT AGAGCTGGGC GTCGCCTATC GGGCCGAATC TCAGCTGGAT
ATCACGCCTT TCAGGGCGAT TGCGTCCACC GACCTGGGGG GCATTCCCCT GAATATCAAG
ATGGCCCTGG TAGATTATTA TCAGCCGGAA ATGTATTCCG TTGGCCTGGC CTACTCACTG
AACCGGTTGA CCCTCTCCGC TGATCTGGAG TTCCAGCAGT GGTCCGGGTT CGAATTTTCC
ACCCCGATGC AAGAGAACTA TGGCGGCGAA CTAAAAGAAT TTGACGATAT CTTTGTTCCC
AAACTGGGCC TGGCCTATGA CTTCAACCCA TCTTTAGACC TGCTTTTCGG GTACTATTAT
GAGCCCTCCT TTGTGCCCGA TGAAGCGGTC AGCGGCCGCA TGAATTTTCT GGATAACGAT
AAACATGTCG TATCACTCGG GTGTGTCTAT CAACTGCCGA AACTGTCAAT GGTGAAGGGC
AACAGCGAAT TCTCGATCGG CTATCAGTAT CAGCACCTGA TGGACCGGGA CGTTATCAAA
ACAGCACCGA CCCCTGAAAA CCCGCACTAT TCCTATGGGG GGAGCTGTCA CTCGTTGATG
CTGGGCGTCT CCATCAATAT CTAG
|
|---|
| Protein sequence | MKKTLCVAVC LVLGVMLTTP AGATHFGDTF GFSPEGMALG NAMTAKVDDW SAVYYNIAGL
GRSQHLVNGK SQLFLGYINN APDLDIEIVR REAATGDRLA TNGDRDLDTG TIVIGGVLDI
GTLVHLPEMV SSTRLGLAIG LNDDQSVVKI NDLDPRTHNF MRYGRECQRM LITTGMGFGF
LHDTFGVGLG VTSFFTGEGT ALLERVELQT ESQSPPGQAK MDLKMEQALV MGAYFSPGKL
WRSLDTLELG VAYRAESQLD ITPFRAIAST DLGGIPLNIK MALVDYYQPE MYSVGLAYSL
NRLTLSADLE FQQWSGFEFS TPMQENYGGE LKEFDDIFVP KLGLAYDFNP SLDLLFGYYY
EPSFVPDEAV SGRMNFLDND KHVVSLGCVY QLPKLSMVKG NSEFSIGYQY QHLMDRDVIK
TAPTPENPHY SYGGSCHSLM LGVSINI
|
|---|
| |