| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_1763 |
|---|
| Symbol | |
|---|
| ID | 5694602 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | - |
|---|
| Start bp | 2123370 |
|---|
| End bp | 2125403 |
|---|
| Gene Length | 2034 bp |
|---|
| Protein Length | 677 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 641264360 |
|---|
| Product | ABC-type branched-chain amino acid transport systems periplasmic component-like protein |
|---|
| Protein accession | YP_001529644 |
|---|
| Protein GI | 158521774 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAGC AGCAGTCGTT CTTCCCTGTT CTAATTGTGC TGGTCTGCGT TGTCCTTTGC
GCGGCGTGCG CTCCTTCGAA GATGTCCGGG CTTTTCGGCC CTTCGCCGGG GGACCAGCTG
TTTGCCCGGG CCGAGGCGGC TTTTTCCCGG CAGGACTATA ACGAGGCCCT CACCCTTTAT
CAGGCCTACC TCACGGAGTT TCCCGGCGGT TCCCACGAAC CCGACGCCCG GTTGCGAAAG
GCCGACATCC GGTCCCGGCA GAACCGGTTT GCTGAATCAC GGGATGGGTA CGAGTCGGTG
ATATCCCGTT ACCCGGCCAG CCGGTACGAA GCCATGGCTG TTATCGGCAT TCTGGAGAGC
TGGCTGCGGC AGAAGGCGTT TTCGACCGTA ATTGAACAGT CCGGCAGGCT TGATGACCGT
ACCGCGCCGG AGCCTATTAT TGTCCGTAAA TACGCACTGG TAGGGGAGGC CTACCTGTCC
ATGGGCAGGC CAATGGACGC GGCCCAGATC CTGATCGCGG CATTGAAAAA AGTGGGGGAG
GAGAACCGGA AACGAATGCT GGTGCTGTTT GACCAGATCG TTGCCGCCAT CGACCCGGAA
GGGGTTAATT CTCTTCTGGC CGGTGTGCGG GATCCCGGTT ACCGGGGGTA TCTGACGTGC
CAGCTGGCCG GCAAATACAT GGCGCTTGAT GAGTATGAAC AGGCCGAGGT CGTGCTTTCC
GATTTCATGG AAAAATTCCC GGGCAACCCG TATACCGGGC AGGCCCGGGA CCTGTTTGAG
CGGATCGCAA AGGAGTCGGT GTACGAACGT TATACCATCG GGTGCCTGCT GCCCCTGACC
GGCAAATATC GCCGTTTCGG GGAACGGGCA CTCAAAGGGG TGCAGCTTGC GTTTCAGTCC
TTTATGGCCG CTTACGGCAC GCAAAACGCG CCGCCTGTCC GTCTGCTTGT CCGCGATACC
GGTTCCGACC CCCAACTGGC CCTGGCCGCA GTGAAGGAGC TTGCGGAAAA CCGCGTGGCG
GCCATCATCG GCCCCCTTGT TTTTTTTGAG GAGGCCATTG TCGAGGCGCA AAACCGCCAT
ATTCCCATTA TCACCCTGAC CCAGGAACCG GATGCGCCTG GCCTGGGAGG ATGGGTGTTC
CGCAACTTTC TGACGTCGCG CATGCAGACC CGCGCCCTTG TTTCTCATGC CCGGGATGTG
CTGGGCATTG ACAGATTTGC CGTGCTCTAT CCGGACGAGC CCTACGGCAG GGTCTTTGCC
AATGCCTTCT GGGACCATGT GGAAGAATCC GGCGGACAGG TTGTCGGATT TGAATCCTAT
GATCCTCAAG AGACCGATTT TGCCGGCCCC ATCAAAAAAC TGGTGGGCCT CTATTACGAC
GTGCCTGAGG ATCTTCAGGA AACGGTTGAC GCCCAGCGGG AGTTCTGGGC CCGGGAAAGA
GGATTGTGGG TGGAACCGGA GCCCGGTATG GATATGCCGG AAGCGGATCA GGCAACAGGC
AGGCAACCGG AGGAGGAGAA AGAGGAAACG GCCATTGTGG ATTTTGACGC TCTTTTTATT
CCCGACGGTC CCTCAAATGC AGGGCTGATC ATTCCGCAGC TGGTCTATCA CGACGTGGTG
GATGTGCTGT TCATGGGTAC CAACCTGTGG CACTCCCCCG AGCTGGTGAA TATGGCAAAA
AAATATGTCA ACGGCGCGAT ACTGCCCACC GGGTTTCCGG AAACAGGCAG CAATCCCGAG
GTAAGGCGGT TTTCAGAGGG GTTTGAAAAT CTGTTTGGCG AAAAACCCGA TTTTATTGCG
GCAGTGGCCT ATGATACGGC AAACCTGCTG TTTCCCATCA TCACCGATTC CGACCTTCGG
TATCGCAGCT CCATCAAAAG AAGGCTGGGC CAGTTGACGG GATTCCCCGG TGTGACCGGT
GTCACCGCGT TTGACGAAAC CGGAGAGGTC CACAAGCGGC TTCCCCTGCT GCAAATCCAG
GGACGCCGGT TCGTGGAAAT TCCGCCATCG GCCCCTTCAC AGAAAGATCA CTGA
|
|---|
| Protein sequence | MKQQQSFFPV LIVLVCVVLC AACAPSKMSG LFGPSPGDQL FARAEAAFSR QDYNEALTLY
QAYLTEFPGG SHEPDARLRK ADIRSRQNRF AESRDGYESV ISRYPASRYE AMAVIGILES
WLRQKAFSTV IEQSGRLDDR TAPEPIIVRK YALVGEAYLS MGRPMDAAQI LIAALKKVGE
ENRKRMLVLF DQIVAAIDPE GVNSLLAGVR DPGYRGYLTC QLAGKYMALD EYEQAEVVLS
DFMEKFPGNP YTGQARDLFE RIAKESVYER YTIGCLLPLT GKYRRFGERA LKGVQLAFQS
FMAAYGTQNA PPVRLLVRDT GSDPQLALAA VKELAENRVA AIIGPLVFFE EAIVEAQNRH
IPIITLTQEP DAPGLGGWVF RNFLTSRMQT RALVSHARDV LGIDRFAVLY PDEPYGRVFA
NAFWDHVEES GGQVVGFESY DPQETDFAGP IKKLVGLYYD VPEDLQETVD AQREFWARER
GLWVEPEPGM DMPEADQATG RQPEEEKEET AIVDFDALFI PDGPSNAGLI IPQLVYHDVV
DVLFMGTNLW HSPELVNMAK KYVNGAILPT GFPETGSNPE VRRFSEGFEN LFGEKPDFIA
AVAYDTANLL FPIITDSDLR YRSSIKRRLG QLTGFPGVTG VTAFDETGEV HKRLPLLQIQ
GRRFVEIPPS APSQKDH
|
|---|
| |