Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dole_1585 |
Symbol | |
ID | 5694422 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfococcus oleovorans Hxd3 |
Kingdom | Bacteria |
Replicon accession | NC_009943 |
Strand | + |
Start bp | 1887861 |
End bp | 1889276 |
Gene Length | 1416 bp |
Protein Length | 471 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641264180 |
Product | RNA methyltransferase |
Protein accession | YP_001529466 |
Protein GI | 158521596 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.953972 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | TTGAACGGCG TTGATCAACC GGTGTCGCCG GTGCGAAAAG GCCAGGCCGT GGACCTGGAG ATCGAAACCC TTGCCTTTGG AGGGCGGGGG CTGGCCCGTG TCGACGGGCT GGCCGTGTTC GTGGACCATA CCCTGCCCGG GGACCGGGTG TCGGCCCGCA TCACCCGCAA AAAGTCCAAT TTTGCCGAAG CCCGGCTTCT GGAGGTCCTT TCCCCCTCGC CGTTCCGTGT CCTGCCCCAA TGCCCTTACT GCGGTCACTG CGGCGGCTGC CGTCTTCAGA TTCTCGACTA TGACAAACAG CTTGACTGCA AGCACGAACA GGTGGCCGAC GCTCTGCGCC ACATCGGCCT GGTGGAAAAC GTGCCGGTGC ATCCGGTGAT GCCCGCTGAC CCGGTGTGGG GCTATCGCAA CAAGATGGAG TTCTCCTTTG CCGACCGCCG CTGGCTACTG CCCGAAGAGA TGGAGATGGA GAATATCGAT ACCTCCTTTG CCCTGGGCCT TCATGTGCCG GGTACGTTTC ACAAGGTGAT CGATGTCGAC GCCTGCCTGC TGCTGCCCGA ACCGGGCAAC GCGATTCTTG GTGACGTGCG GGCCTATGCC AGGGCCTCCG GTGTTCCGGC ATACGGCCTG AAAAGCCACC AGGGATTCTG GCGGTTTTTA ATGCTGCGCC ACTCCGTGGC CCATGACAAC TGGATGGTCA ATATCGTCAC CGCCGCCGAA GACCGGCGCC TGTTGCAGCC CCTGGCCGAC CTGCTGGCAG ACCGATATCC CGAAGTGGTC TCCGTGGTCA ACAACATCAC CGCCAGAAAG GCCGGGGTGG CCCAGGGCGA ATATGAGATT CTGCTCCACG GCGCCCCTTT TATTTCAGAC CGGCTGGGCC GATTCTCCTT TGATATATCG GCCAACTCTT TTTTTCAGAC CAACACGCGG GGGGCCGAGC GGCTCTACAC CGTGGCCAGG GAATATGCCG GGCTGACCGG GAGCCAAACC GTGGTGGACC TTTACTGCGG CACCGGCACC ATTGCCATCT GGCTGTCGGG TGCGGCAAAA GAGGTGATCG GCCTTGAAAT CAACGACAGC TGCCTGGCCG ATGCCGTAAA TAACTGCCGG ACCAACAATG TCTCCAATGT CCGGTTTGTG GCCGGAGACG TGAAGGAGAC CCTTCCCCGG CTGGACTGCC GGGCCGATGT GCTGGTCATT GATCCGCCCC GGGCCGGCAT GCACAAGGAC GTTGTGGAGC AGGTCCTGGC CATGGCGCCG CCGCGCATTG TTTATGTGTC GTGTAACCCC GCCACCCTGG CCAGGGACGT GGCCATGCTC AGTGAAGCCT ATACCGTGGC CGAGGTCCAG CCGGTGGACA TGTTTCCCCA CACTCCCCAT ATCGAGTGCG TGGCCCGGCT GGACAAGAAA GCATAA
|
Protein sequence | MNGVDQPVSP VRKGQAVDLE IETLAFGGRG LARVDGLAVF VDHTLPGDRV SARITRKKSN FAEARLLEVL SPSPFRVLPQ CPYCGHCGGC RLQILDYDKQ LDCKHEQVAD ALRHIGLVEN VPVHPVMPAD PVWGYRNKME FSFADRRWLL PEEMEMENID TSFALGLHVP GTFHKVIDVD ACLLLPEPGN AILGDVRAYA RASGVPAYGL KSHQGFWRFL MLRHSVAHDN WMVNIVTAAE DRRLLQPLAD LLADRYPEVV SVVNNITARK AGVAQGEYEI LLHGAPFISD RLGRFSFDIS ANSFFQTNTR GAERLYTVAR EYAGLTGSQT VVDLYCGTGT IAIWLSGAAK EVIGLEINDS CLADAVNNCR TNNVSNVRFV AGDVKETLPR LDCRADVLVI DPPRAGMHKD VVEQVLAMAP PRIVYVSCNP ATLARDVAML SEAYTVAEVQ PVDMFPHTPH IECVARLDKK A
|
| |