| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_1427 |
|---|
| Symbol | |
|---|
| ID | 5694263 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | + |
|---|
| Start bp | 1699399 |
|---|
| End bp | 1701174 |
|---|
| Gene Length | 1776 bp |
|---|
| Protein Length | 591 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641264021 |
|---|
| Product | phosphoribosylamine--glycine ligase |
|---|
| Protein accession | YP_001529308 |
|---|
| Protein GI | 158521438 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0041] Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase
[COG0151] Phosphoribosylamine-glycine ligase |
|---|
| TIGRFAM ID | [TIGR00877] phosphoribosylamine--glycine ligase
[TIGR01162] phosphoribosylaminoimidazole carboxylase, PurE protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGTCC TGGTGATCGG CAGCGGCGGC CGGGAACACG CTCTGGTCTG GAAAATCGCC
CAGAGCCCCA AAGTAGACAA GATTTTCTGC GCTCCGGGCA ACGCGGGCAT CGCTCCATTG
GCGGCGTCTG TGCCCATCAA GGCGGATGAC GTGGACGGGC TGCTGGAGTT TGCCGCCGAA
GAGCAGATCG ACCTGACCGT TGTCGGCCCC GAGGCGCCTC TGTCTCTTGG CATTGTGGAC
CGGTTCGAGG CGGCGGGCCT GAAGGTTTTC GGGGCCGGCC GGGACGCGGC CCGGCTGGAG
ACCAGCAAGG GTTACGCCAA GGAGATCCTG CTCAAGTACA ACATTCCCAC GGCCAGGGGG
CGTTGTTTTG ATGATTATGA CGAGGCCCTG GCCTACCTGA AGGAACTGGG CGGCGCCGTG
GTGGTAAAGG CCGATGGTCT GGCCGCGGGC AAGGGCGTTT TTGTGTGCAA CAGCGAAAAG
CAGGCCGCGG ATGCCCTCAG GCAGATTATG AAAGACCGGC TTTTCGGGGA CGCCGGAAAC
CGGGTGGTGA TAGAGGAACG TCTCGAGGGA GAGGAGGCCT CTTTTATTGC GCTCACCGAC
GGGGAAACCG TGTTGCCGAT GCCCTGTTCC CAGGATCACA AGGCCGTGGG TGACGGCGAC
ACCGGTCCCA ACACCGGCGG CATGGGTGCC TATTCCCCGG CGCCGGTGGT GGATGAATAC
CTTCACAGAA AGATCATGGA GACCGTCATG GTGGCCACGG TCAAGGCCAT GGCCGCTGAG
GGGGTTCGCT ACAGGGGGGT GCTCTATGCC GGGCTGATGA TCTCCGGTGG CAACGTGCGC
GTGCTGGAAT TCAACGCCCG TTTCGGCGAT CCCGAGGCCC AGCCCCTGCT GATGCGCGTG
AAAAACGACA TTGTTCCCGT ATTGGAGGCG GTGTGTGAAA ACCGGCTTCA TGAGCATACC
CTGGAAATTG ACGACCGGGC CGCCGTCTGC GTGGTCATGG CATCCGGCGG GTATCCCGGG
GCCTATAAAA AAGGCATGGC CATTTCCGGG CTGTCCAACG TCAACCGCAT GAAGGACGTG
GTGGCCTTTC ACGCCGGCAC CCGGGCCAAA GGCAAAAAGG TGGTCACCGA CGGGGGGCGG
GTCCTGGGTG TCACCGCGCT GGGCAAAACC GTGGAGGACG CCATTCGGCG GGCCTACGAG
GCAGTGGCGA AAATCTCCTG GGAAGGGGCC TATCACCGGA ATGACATCGG CCACAAGGCC
CTTAAGCGGC TGGTGGAAAA GCCCAGGGTC TCCATTCTCA TGGGCAGCGA CTCGGACCTG
AAAATCATGG AGGAGGCGGC CGGTGTGCTT CAAAAATTCG GGGTGGCCTA CGAGATGACC
GTGGCGTCGG CCCACCGGAC CCCGGCCCGG GTGGAAAAGA TTGTTTCCAC GGCCAGAGAG
CGCGGCATTC AGGTGTTTAT CGCCGGTGCC GGCATGGCGG CCCATCTGGC CGGCGTGATT
GCCTCTCACA CCACCCTGCC GGTGATCGGC GTCCCCATTG ATGCTTCCCC ATTAAACGGC
CTGGACGCTC TGCTGTCAAC GGTCCAGATG CCGCCGGGCG TGCCGGTGGC AACCGTGGCC
GTGGGCAAGG CCGGCGCAAA AAACGCCGGT TTCCTGGCCA TTCAGATTAT GGCGGTGTCA
GACGAGACTT TGGCGGCGGC ACTGTCGGCC CACAAGAAGG ACATGGCGGC CGATGTTGAA
AAAAAGGCCC AACAGCTTGG CCGATTACAG GCATAA
|
|---|
| Protein sequence | MKVLVIGSGG REHALVWKIA QSPKVDKIFC APGNAGIAPL AASVPIKADD VDGLLEFAAE
EQIDLTVVGP EAPLSLGIVD RFEAAGLKVF GAGRDAARLE TSKGYAKEIL LKYNIPTARG
RCFDDYDEAL AYLKELGGAV VVKADGLAAG KGVFVCNSEK QAADALRQIM KDRLFGDAGN
RVVIEERLEG EEASFIALTD GETVLPMPCS QDHKAVGDGD TGPNTGGMGA YSPAPVVDEY
LHRKIMETVM VATVKAMAAE GVRYRGVLYA GLMISGGNVR VLEFNARFGD PEAQPLLMRV
KNDIVPVLEA VCENRLHEHT LEIDDRAAVC VVMASGGYPG AYKKGMAISG LSNVNRMKDV
VAFHAGTRAK GKKVVTDGGR VLGVTALGKT VEDAIRRAYE AVAKISWEGA YHRNDIGHKA
LKRLVEKPRV SILMGSDSDL KIMEEAAGVL QKFGVAYEMT VASAHRTPAR VEKIVSTARE
RGIQVFIAGA GMAAHLAGVI ASHTTLPVIG VPIDASPLNG LDALLSTVQM PPGVPVATVA
VGKAGAKNAG FLAIQIMAVS DETLAAALSA HKKDMAADVE KKAQQLGRLQ A
|
|---|
| |