Gene Dole_0506 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDole_0506 
Symbol 
ID5693328 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfococcus oleovorans Hxd3 
KingdomBacteria 
Replicon accessionNC_009943 
Strand
Start bp571857 
End bp573299 
Gene Length1443 bp 
Protein Length480 aa 
Translation table11 
GC content56% 
IMG OID641263090 
ProductRNA polymerase, sigma 54 subunit, RpoN 
Protein accessionYP_001528393 
Protein GI158520523 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.670024 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCCTTG ATCTGCGACA ACACCTCAAG CTGAGCCAGC AACTGGTCAT GACCCCCCAG 
CTGCAGATGG CCATTCGGCT GCTGCAGCTC AACCGGCTGG AGATGGTGGA CATGATCCAG
CAGGAACTGT CCGAAAATCC GGCACTGGAA GAGGCCCCGG AAACAGCGCC CGAAGACGAG
CTCTCAACCG ATGACAGGGA AGCGGAGGCC CTTCCCGAAA GGGTTGAAGC GGAAAAGGAG
GTCTCTATTG AAGAAAAGAT CTCCGACCAG GTGGAGTGGG AAAACTACCT CAATGAATAC
AACTCCTACG GCGGGGTCCA GTTTGAAAGC GAGGCCAGGG AGCAGCCCCA GTATGAATCC
TTTGTCGCCT CCCACAAGTC CTTAAAGGAC CACCTGCTGT GGCAGTTTCT CATGACCCTG
CCCACCGGCC AGGAAGAGGC CATTGCCAGC CTGATCGTCG GCAACGTGGA TGACGATGGT
TATCTCAAGG CCGATGTGGC GGAGATCGCG GCCACGGCCA ACGCGCCCAT AGAGCAGGTG
GAAACCATTC TGGCCATGCT CCAGAATTTT GACCCGCCCG GCGTATGCGC CCGGACCCTT
GCGGAATGCC TGTTGATCCA GGCCCGCCAG CTGGGAATCG ACACCCCGGT GATCGCCGGC
ATCCTGAACA ACCACATGAA GCATCTGGAG TCCAAAAATT ACAAGGTCAT TGCCAGGGCA
CTGAAAACCG ACACGGAAGA GATCGTGGCC GCGGTCAACC TGATCCGGAC CTTAGAGCCC
CGGCCCGGCA GAAGCTTCAA GCAGGAGGAC GCCGGGTACA TCATTCCCGA TATTTATGTT
CACAAATTCG AAAACGATTT TGTCATTGTT TTAAACGACG ACGACCTGCC GCGACTGCAC
ATCAGCCCCT ACTACCGGCA GGCGATGCGG GGCCGGGCCG CCGGATCAAA AGAGGCCAAA
GAGTACCTGC AGGAAAAAAT CCGGTCCGCC ACCTGGCTGA TCAAAAGCAT TCAGCAGCGG
CAGAAGACCA TCTACGCGGT CATGAACAGC ATCCTCAAGT TTCAGCGTGA TTTTTTTGAA
AAGGGGGTGG CCCACCTCAG GCCCATGATC CTGCGGGATG TGGCCGAAGA CATCGGCATG
CACGAATCCA CCATCAGCCG GGTCACCACC AACAAATACG CCCACACACC CCAGGGCATC
TTTGAATTGA AATACTTTTT CAACAGCGCC ATCAACCGGA CCGGCGCCGA CAGCATGGCG
TCGGTCAGCG TACAGGACAA AATTCGGCAG ATCATAAAAA ACGAAAACCC CAAAAAGCCC
TTCAGCGACG ACAAGATCGC TGACATACTC AAAGCGGCCA ACATCAACAT CGCACGGCGC
ACGGTGACAA AATACCGGGA AGCCATGGGC ATCCTGTCAT CCACCAAGCG CAAACAATTT
TAA
 
Protein sequence
MALDLRQHLK LSQQLVMTPQ LQMAIRLLQL NRLEMVDMIQ QELSENPALE EAPETAPEDE 
LSTDDREAEA LPERVEAEKE VSIEEKISDQ VEWENYLNEY NSYGGVQFES EAREQPQYES
FVASHKSLKD HLLWQFLMTL PTGQEEAIAS LIVGNVDDDG YLKADVAEIA ATANAPIEQV
ETILAMLQNF DPPGVCARTL AECLLIQARQ LGIDTPVIAG ILNNHMKHLE SKNYKVIARA
LKTDTEEIVA AVNLIRTLEP RPGRSFKQED AGYIIPDIYV HKFENDFVIV LNDDDLPRLH
ISPYYRQAMR GRAAGSKEAK EYLQEKIRSA TWLIKSIQQR QKTIYAVMNS ILKFQRDFFE
KGVAHLRPMI LRDVAEDIGM HESTISRVTT NKYAHTPQGI FELKYFFNSA INRTGADSMA
SVSVQDKIRQ IIKNENPKKP FSDDKIADIL KAANINIARR TVTKYREAMG ILSSTKRKQF