Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dole_0506 |
Symbol | |
ID | 5693328 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfococcus oleovorans Hxd3 |
Kingdom | Bacteria |
Replicon accession | NC_009943 |
Strand | - |
Start bp | 571857 |
End bp | 573299 |
Gene Length | 1443 bp |
Protein Length | 480 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 641263090 |
Product | RNA polymerase, sigma 54 subunit, RpoN |
Protein accession | YP_001528393 |
Protein GI | 158520523 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.670024 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCCTTG ATCTGCGACA ACACCTCAAG CTGAGCCAGC AACTGGTCAT GACCCCCCAG CTGCAGATGG CCATTCGGCT GCTGCAGCTC AACCGGCTGG AGATGGTGGA CATGATCCAG CAGGAACTGT CCGAAAATCC GGCACTGGAA GAGGCCCCGG AAACAGCGCC CGAAGACGAG CTCTCAACCG ATGACAGGGA AGCGGAGGCC CTTCCCGAAA GGGTTGAAGC GGAAAAGGAG GTCTCTATTG AAGAAAAGAT CTCCGACCAG GTGGAGTGGG AAAACTACCT CAATGAATAC AACTCCTACG GCGGGGTCCA GTTTGAAAGC GAGGCCAGGG AGCAGCCCCA GTATGAATCC TTTGTCGCCT CCCACAAGTC CTTAAAGGAC CACCTGCTGT GGCAGTTTCT CATGACCCTG CCCACCGGCC AGGAAGAGGC CATTGCCAGC CTGATCGTCG GCAACGTGGA TGACGATGGT TATCTCAAGG CCGATGTGGC GGAGATCGCG GCCACGGCCA ACGCGCCCAT AGAGCAGGTG GAAACCATTC TGGCCATGCT CCAGAATTTT GACCCGCCCG GCGTATGCGC CCGGACCCTT GCGGAATGCC TGTTGATCCA GGCCCGCCAG CTGGGAATCG ACACCCCGGT GATCGCCGGC ATCCTGAACA ACCACATGAA GCATCTGGAG TCCAAAAATT ACAAGGTCAT TGCCAGGGCA CTGAAAACCG ACACGGAAGA GATCGTGGCC GCGGTCAACC TGATCCGGAC CTTAGAGCCC CGGCCCGGCA GAAGCTTCAA GCAGGAGGAC GCCGGGTACA TCATTCCCGA TATTTATGTT CACAAATTCG AAAACGATTT TGTCATTGTT TTAAACGACG ACGACCTGCC GCGACTGCAC ATCAGCCCCT ACTACCGGCA GGCGATGCGG GGCCGGGCCG CCGGATCAAA AGAGGCCAAA GAGTACCTGC AGGAAAAAAT CCGGTCCGCC ACCTGGCTGA TCAAAAGCAT TCAGCAGCGG CAGAAGACCA TCTACGCGGT CATGAACAGC ATCCTCAAGT TTCAGCGTGA TTTTTTTGAA AAGGGGGTGG CCCACCTCAG GCCCATGATC CTGCGGGATG TGGCCGAAGA CATCGGCATG CACGAATCCA CCATCAGCCG GGTCACCACC AACAAATACG CCCACACACC CCAGGGCATC TTTGAATTGA AATACTTTTT CAACAGCGCC ATCAACCGGA CCGGCGCCGA CAGCATGGCG TCGGTCAGCG TACAGGACAA AATTCGGCAG ATCATAAAAA ACGAAAACCC CAAAAAGCCC TTCAGCGACG ACAAGATCGC TGACATACTC AAAGCGGCCA ACATCAACAT CGCACGGCGC ACGGTGACAA AATACCGGGA AGCCATGGGC ATCCTGTCAT CCACCAAGCG CAAACAATTT TAA
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Protein sequence | MALDLRQHLK LSQQLVMTPQ LQMAIRLLQL NRLEMVDMIQ QELSENPALE EAPETAPEDE LSTDDREAEA LPERVEAEKE VSIEEKISDQ VEWENYLNEY NSYGGVQFES EAREQPQYES FVASHKSLKD HLLWQFLMTL PTGQEEAIAS LIVGNVDDDG YLKADVAEIA ATANAPIEQV ETILAMLQNF DPPGVCARTL AECLLIQARQ LGIDTPVIAG ILNNHMKHLE SKNYKVIARA LKTDTEEIVA AVNLIRTLEP RPGRSFKQED AGYIIPDIYV HKFENDFVIV LNDDDLPRLH ISPYYRQAMR GRAAGSKEAK EYLQEKIRSA TWLIKSIQQR QKTIYAVMNS ILKFQRDFFE KGVAHLRPMI LRDVAEDIGM HESTISRVTT NKYAHTPQGI FELKYFFNSA INRTGADSMA SVSVQDKIRQ IIKNENPKKP FSDDKIADIL KAANINIARR TVTKYREAMG ILSSTKRKQF
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