Gene Dole_0448 details

Gene Information

• Locus tag: Dole_0448
• ID: 5693268
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfococcus oleovorans Hxd3
• Kingdom: Bacteria
• Replicon accession: NC_009943
• Strand: -
• Start bp: 515117
• End bp: 517117
• Gene Length: 2001 bp
• Protein Length: 666 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 641263030
• Product: exoribonuclease II
• Protein accession: YP_001528335
• Protein GI: 158520465
• COG category: [K] Transcription
• COG ID: [COG0557] Exoribonuclease R
• TIGRFAM ID: [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.0154818
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAAAAAG GCACCATCAT CGACTTTATC GACAGCCAGA AAATGATCTG CGCCGTGGCC 
ACGGAAACCT CCGGGACCGG GACCAGCCAC CTTCGCCTGC TCACGGAAAA CGGCCGCGAA 
GTAAAGCTGC CCTTGCGCCG GGCCTCGTAC GCCGGGGGAC GGCTCAACCC GTCGGTCGGC 
CGGCAGGCCC TGGTGGACCA GCTAAAGGCC ACGGCCCACA AACGGAGTGA GCTGGCGGAA 
CGCGTCGATA TTAAAGAGGT CTGGGACCTG CTCAAAGACG AGGATCAGTG GATTGATCTT 
GCTTCCATGA CCGGGCTCTG TTTTTCCGGC CCGGTCACAC CGGACCATGA AGCCGCGGTG 
GTGCGGGCGA TTTTTGATGA CCGGCTCTAC TTCAAGTTCG ACCACAACCG GTTCTACCCC 
CACACGGAAG AACAGATTCA CGCCATTTGC GTGCGGCGGG ACAAAGAGGC CCGGCAGCGG 
GCAATGATCC ATGAAGGCGC GGAATGGCTC AAAAAAGCCG GCGCCGGCAC CCCGCCGCCC 
ATGGATGAAA CGGCCCGGGC CGTGGTGGAT GTGCTGGCCG ACTACTACGT GTTTGAAAAA 
GAGGCCAAAG AACCGGCCCT TGCCAGGGAG ATTCTTGGCG GGGCGGGCAA TCTTTCGCCG 
GACACGCTCT TTTCCCTTCT GGTCAGGCTG GGGGTATGGG ACGAGCACGA AAACATCGAC 
CTGCTTCGGC ACCGGGTGCC GGTGTCCTGG CCCGACGACG TCACAAAGGC ATCCGAAAAG 
CTGGTAGCCA CTGCCGGCAT CCCCTCTGCC GGGCCGGACC GGGTCGACCT GACCGGGCTT 
TCCCTGTTTA CCATCGACGG CAGCCAGACC CTGGATTTTG ACGACGCGCT CAGCCTGGAA 
CCCATGGAAA ACGGGGCCTG CCGCCTGGGC ATTCACATCA GCGACGTGGG CCACTATATA 
AAAAAGGAAG ACCCCCTGGA TGCCGAGGCC TTAAAGCGCG GCAGTTCCAT CTACACGGCG 
GACAAAAAAA TTCCCATGCT GCCTGCCGAA ATCTCCGAAG GCCTTTGCAG CCTGGTAGCG 
GGCAAGCCCC GGCCGGCCAT CTCCATGCTG ATCACCCTCT CCTCTTCGGC CGAGGTCATG 
GAGTGCCGGG TGGTTGCCTC TGTGATCCGG GTGGAGAACC ACCTGACCTA CAGCCAGGTA 
AACCTTTCCC TGGACAAAGA TGAACGGCTG GGCCGGCTTT CCCGGATCGC CGTGAGGTTG 
CGTGAAAAAA GGGTCCGCGA CGGGGCCCTG CTCATCGAGA TTCCCGAACT CTACGTTCAG 
TTTGACGACA ACCGGGCGGT GGTGCTGGCA AAGGGCGACC GGGAGAGCCC CTCCCGCATC 
CTGATAGAAG AGATGATGAT TCTGGCCAAC ACCGTTATGG CCCGGTTTTT AAAGGAGCAC 
GGCCTGCCCG CCATCTTCCG GTCTCAGCCC GAGCCCAAAA CCCGGCTTTT TAAAAAAGGG 
ACCACCGGCG AGACCCTGTT TCAGAACTGG GTGCAGCGGA AAATGGTGGC CCGGGTGGTG 
GTCGACACAA AGCCGGAGCG CCACTGCGGC CTGGGCGTGG ACCTTTACAC CTCGGCCACC 
TCCCCGATCC GGAAATACGC GGACCTGATT ACCCAGCGCC AGGTGCGGGC GGCCCTGGGC 
CTTGAAACAC CTTACACCGA AGACCAGTTG CAGCACCTGA TGCAGATGCT GCAGCAGCCC 
CTCTCCTACG TGGGCAAAAT TCAGCAGGCC CGCCACCGCT ACTGGGTATT CAAACACCTG 
GAGACAAAAA CAGGACAGCG CGTGAACGCC ATTGTGCTGG ACCGGTTTAA AAACGAGTAT 
TCCATCCTGC TGCCCGACTA CCTGACCGAG TGCCGGCTTC CCATGCCCCC CTCAGCGCTC 
CTGAAACCCA AAGACACCAT CCAGGTCACC ATTCAGCACG TCAACGCCAG AAACGGGGTC 
ATTTCGGTTT TCTGTAATTG A 

 

Protein sequence

MEKGTIIDFI DSQKMICAVA TETSGTGTSH LRLLTENGRE VKLPLRRASY AGGRLNPSVG 
RQALVDQLKA TAHKRSELAE RVDIKEVWDL LKDEDQWIDL ASMTGLCFSG PVTPDHEAAV 
VRAIFDDRLY FKFDHNRFYP HTEEQIHAIC VRRDKEARQR AMIHEGAEWL KKAGAGTPPP 
MDETARAVVD VLADYYVFEK EAKEPALARE ILGGAGNLSP DTLFSLLVRL GVWDEHENID 
LLRHRVPVSW PDDVTKASEK LVATAGIPSA GPDRVDLTGL SLFTIDGSQT LDFDDALSLE 
PMENGACRLG IHISDVGHYI KKEDPLDAEA LKRGSSIYTA DKKIPMLPAE ISEGLCSLVA 
GKPRPAISML ITLSSSAEVM ECRVVASVIR VENHLTYSQV NLSLDKDERL GRLSRIAVRL 
REKRVRDGAL LIEIPELYVQ FDDNRAVVLA KGDRESPSRI LIEEMMILAN TVMARFLKEH 
GLPAIFRSQP EPKTRLFKKG TTGETLFQNW VQRKMVARVV VDTKPERHCG LGVDLYTSAT 
SPIRKYADLI TQRQVRAALG LETPYTEDQL QHLMQMLQQP LSYVGKIQQA RHRYWVFKHL 
ETKTGQRVNA IVLDRFKNEY SILLPDYLTE CRLPMPPSAL LKPKDTIQVT IQHVNARNGV 
ISVFCN