| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_0413 |
|---|
| Symbol | |
|---|
| ID | 5693232 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | + |
|---|
| Start bp | 474524 |
|---|
| End bp | 475873 |
|---|
| Gene Length | 1350 bp |
|---|
| Protein Length | 449 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641262994 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | YP_001528300 |
|---|
| Protein GI | 158520430 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAATC ACGTCCCGCG CCTGCTCAGG CTGGCTTTCC CCCTGATTCT TTCATCCTCG
GCCGTCATGA CCATGCAGAT CATTGATACG ATCGTGCTGT CGTGGCACTC GGCCGAGGCC
GTGGCGGCCA TGGGACCTTC CAGCCTGGCC GTGATCCTGT TCCAGGGTTT TTTATACGGC
ATCGCCGCCT ATGCCGGCAC CTTTGTGGCC CACAGCCACG GACGCGGGGA CAGCATGGGC
GTTAAAAAAT CCACGTGGAT GGGCATTCAT GCCGCCCTGT TTTCCGGCCT GGCGGCACTG
ATCGCTGCCT GGCCCCTGGC CCGGCTGTTT CTGCTGATGG GCCACGATCC ACTGGTGGCC
CGGTATGAGA TGACCTATTT CTGGATCTGC ATGGCCGGAT CTTTTTTCCC GGTGGCCGGC
GGCGCACTGG CCGGCTGGCT CTCCGGCATC GGCCGCACCC TTGCCATCAC CTGGGTCATG
CTTTTTGCGT TTACCATCAA TGCCGTGCTG ACCTGGGCCC TGGTGCTGGG CAGGTGTGGC
CTGCCTCAAA TGGGTATTGC CGGCGCGGCC ATCGGCACCG TGACCGCGGA AATGATCTCC
GCCAGCCTGT TCACGATCCT GTTTGCAAGG GCCGGCGGGT TCGGCGAGGC AGCGGCCCGC
CGGTTTGAAT GGCCCGCCTT CCGCCATTTT CTCTTGCTGG CCGTGCCCGT GGGGTTAAGG
ATCAGCGGCG AACTGGTGGC CTGGACCCTG TTTCTGGTGA TCATCGGCCG GCTGGGCGTG
GCAGAGCTGG CCGCCTCCAG CATCGCCTTC CGCATCAACG GCCTGGCCTT TTTCCCGGCC
ATCGGCCTGG CCCAGGCCGC GGGCATCCTG GTGGGTCAGG CCCGGGGCGC CGGGAAAGAC
CATGATGTAC CGGCCATTGC CTGGCAGTCC CTGGCCGTGG GTGAGGCGTG GATGCTGGCC
ATGGCCCTGC TGTTTGCCCT GGCCCCGGCC CCGCTGATGT CGGTTTTTGC CGGCTTCGGG
CCGGAAAGCG CCCAAATCGT GGCCGCCGGC ATCCTGATTT TAAAATTCGT GGCCCTTTAC
TGCATTCTGG ACGCGGCCAA CATCATCATC GGGTGGGTGC TGGCCGCCGC CGGGGACACC
CGGTGGCTGG CCTGGGCCTA CTGCGCCTCT TCCGGCGTGT TTCTCGCGCT GCTCTGGCTG
GTGGACCGGA CCATGCCCGG CCTGGTCACG GAATGGACCC TGGCCACGAT TTTTATCGGC
ACCACGGCCG TGATCTGGAT GGTGCGGTTT CAGTCCGGGG CCTGGCAAAA GGCCCGGGTG
CTGCGGGAGA CTGTTGTACC GACGGTTTAA
|
|---|
| Protein sequence | MFNHVPRLLR LAFPLILSSS AVMTMQIIDT IVLSWHSAEA VAAMGPSSLA VILFQGFLYG
IAAYAGTFVA HSHGRGDSMG VKKSTWMGIH AALFSGLAAL IAAWPLARLF LLMGHDPLVA
RYEMTYFWIC MAGSFFPVAG GALAGWLSGI GRTLAITWVM LFAFTINAVL TWALVLGRCG
LPQMGIAGAA IGTVTAEMIS ASLFTILFAR AGGFGEAAAR RFEWPAFRHF LLLAVPVGLR
ISGELVAWTL FLVIIGRLGV AELAASSIAF RINGLAFFPA IGLAQAAGIL VGQARGAGKD
HDVPAIAWQS LAVGEAWMLA MALLFALAPA PLMSVFAGFG PESAQIVAAG ILILKFVALY
CILDAANIII GWVLAAAGDT RWLAWAYCAS SGVFLALLWL VDRTMPGLVT EWTLATIFIG
TTAVIWMVRF QSGAWQKARV LRETVVPTV
|
|---|
| |