| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_0405 |
|---|
| Symbol | |
|---|
| ID | 5693224 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | + |
|---|
| Start bp | 465921 |
|---|
| End bp | 466697 |
|---|
| Gene Length | 777 bp |
|---|
| Protein Length | 258 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641262986 |
|---|
| Product | pseudouridine synthase |
|---|
| Protein accession | YP_001528292 |
|---|
| Protein GI | 158520422 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCCC CAACACCCGA CTTTTTCATA CCCCAATGGC CGGTGCTGTA TGAAGACAAC
CATCTTCTGG CCCTTTATAA ACCAGCCGGC CTGCTTGTTC AAGGAGATAG CACCGGCGAC
CCCACCCTTC TGGAGCTGGG CCGGTGCTGG CTCAAAATAC GGTACAACAA GCCGGGCAAG
GTTTTTCTGG GAATGGTGCA CCGCCTGGAT CGGCCCGTGG CCGGGGTGGT GCTGTTCTGC
CGCACCTCCA AGGCGGCGGG CCGGATCAGC GCTCAGTTCC GCGACGGTGT TACGGCCAAA
CAGTACGTGG CCGTGGTGGA AGGCGTCATT CCCGAGAACG AGGGCCGCCT GGCTAACCAC
ATTTTTCGGC GCGGCCCCAC CAGCCATATT ATTGACGTTC CTACCCCGAA AAGCCGGGAG
GCGCGCCTGG CCTTTCACGT GATTGACAGG ACAGACAGCC GCACCCTGGT CAAGATCGAC
CTTGAAACCG GCCGCCATCA CCAGATTCGG GTCCAGTTTG CCCACCTGGG CTTTCCCGTG
GTGGGTGACC TGCGCTACGG CGCCCCGGCC CCGCTGCCCG GCCGCCAGAT CGCCCTGCTG
GCCCGGCGCC TGACAGTGAC CCATCCCACC CTGGGCCATG CACTTACCTT TACCAGCTCA
TTTCCCTGGG GCTGGCCCTG GCCCGGCGAC CACGCCAACA GTGACGCCCC GCCCTGGAAC
TGGTCGGAGA TACAGGAGAC CGTCATGCCC CTTCTGCCGC CGGAGGCGCC ATGTTAA
|
|---|
| Protein sequence | MTAPTPDFFI PQWPVLYEDN HLLALYKPAG LLVQGDSTGD PTLLELGRCW LKIRYNKPGK
VFLGMVHRLD RPVAGVVLFC RTSKAAGRIS AQFRDGVTAK QYVAVVEGVI PENEGRLANH
IFRRGPTSHI IDVPTPKSRE ARLAFHVIDR TDSRTLVKID LETGRHHQIR VQFAHLGFPV
VGDLRYGAPA PLPGRQIALL ARRLTVTHPT LGHALTFTSS FPWGWPWPGD HANSDAPPWN
WSEIQETVMP LLPPEAPC
|
|---|
| |