| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_0325 |
|---|
| Symbol | |
|---|
| ID | 5693144 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | + |
|---|
| Start bp | 370335 |
|---|
| End bp | 371519 |
|---|
| Gene Length | 1185 bp |
|---|
| Protein Length | 394 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641262906 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001528212 |
|---|
| Protein GI | 158520342 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.320199 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTGCCC TGGCAATCAT CATACTGCTG TGGGCGGACG GAACCCGTGA ATCTGTTTTA
CGGTTTTCCG AAACGATTTT TATTGCCACG CTGGTGCCGG CCCTGTTTTT TTCCCTGCGG
CTGGGCAGAA GCAACCATTT TTTCACGGTC CTTGTGCTGG CCGGCCTGGC CGGGGCCGCG
GCCCTTCTGG TGCCGGCCAC TTTTTCGTCC GCCACGGCCC AACAGCGGTT TTATTATCAT
GCGGCAGCCG TCCTGGCACC GCTGCATTTC GTTCTGTTCG CCTGGTGGCA TGAGCGGGGC
CTTCTCAACA TGTGGGGGCT TTCCCGCCTG ATCTGGATCG GCCTGGTGCC CGCGGCCGCG
GCGGCCGCCT GCAGGGTTCC CGACATCATC CATCACCCCG GCCTGGCACG GTTTGTTTTT
CACCGCGCGC TTTCAGGATT CCCGGATGTT CCCCTGGTTC CCCTGATTGC AGCCCTGCTG
GCCCTGATGC TTCTCCTGGT CATGTACCTG CGTGACCCCT CTCCGGCCCG GGACGGTTTT
TTCTGGGCAA CAGCAATTGT ATCCGCCGGT TTTCTCTTTC AGAAAGGCCC TGTGGTGCTT
CAACTGGCGG CCTCCGGGGC CATTGTGGTG CTGCTGGTCT CCATGGTGGA AACCGGGCAC
TTTTTTGCCT ACCGGGACGA GCTGACCGGC CTGCCGTCCC GCAGGGCCCT GAATGAAAAG
CTGCAGGCCC TGGGTCGGAC CTACACCATT GCCATGGTGG ATGTGGATCA TTTCAAGCGG
TTTAACGACC GGTACGGCCA TGACGTGGGC GACGAGGTGC TGAAAAAGGT GGCCGCGGCC
CTCAAAAGAG CCGGGGGAAA CGCCTACCGG TTCGGCGGGG AGGAGTTTAC CCTTGTTTTT
CCGGGAAAAG CCCTGGCCCA GGGAAAAGCG GCGGCGGAAG CAGCCCGGAA CGCGGTGAGC
CGGTCCGCCT TTACCATTCG AAGCCCGGCC CGGAAGAAAA AAGACGGCAG CGCCCCGGAA
AAGGCAACGC CGGGAAAGCG AAAGCGCGTG TCTGTAACGG TCAGCATCGG CCTGGCCCAG
CGGTCGTCAC GCCACACCAC CCCCGACGCC GTGATCAAGG CGGCGGACCG GGCCCTTTAC
AGGGCCAAGA AGAACGGCCG CAACCGAACC GAAACCGCCC CATGA
|
|---|
| Protein sequence | MIALAIIILL WADGTRESVL RFSETIFIAT LVPALFFSLR LGRSNHFFTV LVLAGLAGAA
ALLVPATFSS ATAQQRFYYH AAAVLAPLHF VLFAWWHERG LLNMWGLSRL IWIGLVPAAA
AAACRVPDII HHPGLARFVF HRALSGFPDV PLVPLIAALL ALMLLLVMYL RDPSPARDGF
FWATAIVSAG FLFQKGPVVL QLAASGAIVV LLVSMVETGH FFAYRDELTG LPSRRALNEK
LQALGRTYTI AMVDVDHFKR FNDRYGHDVG DEVLKKVAAA LKRAGGNAYR FGGEEFTLVF
PGKALAQGKA AAEAARNAVS RSAFTIRSPA RKKKDGSAPE KATPGKRKRV SVTVSIGLAQ
RSSRHTTPDA VIKAADRALY RAKKNGRNRT ETAP
|
|---|
| |