| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_0261 |
|---|
| Symbol | |
|---|
| ID | 5693079 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | + |
|---|
| Start bp | 295666 |
|---|
| End bp | 299319 |
|---|
| Gene Length | 3654 bp |
|---|
| Protein Length | 1217 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 641262841 |
|---|
| Product | DNA polymerase III, alpha subunit |
|---|
| Protein accession | YP_001528148 |
|---|
| Protein GI | 158520278 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0587] DNA polymerase III, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc)
[TIGR03655] restriction alleviation protein, Lar family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGACCG TCCCAGATCA ATTTGTCCAT CTTCATGTTC ACACCTGCTA CAGCCTGCTG
GACGGGATAA TTCGCCCGGA CGATCTGGTT GCGCGGGCCG TTGAATACAA GATGCCGGCC
GTGGCCATCA CCGACCACGG CACCATGTTC GGCGTTATTC AATTTTACAT GGAAGCCGTC
AGGGCGGGCA TTAAACCCAT AATCGGCTGT GAATGCTATG TGGCGCCGCG GACCATCGCC
GACAAAACAC CGGCAGACCA CGCCGGCCTG TCCCATCTTG TTTTGCTGGC CGAAACCATG
GAAGGCTATC GCAACCTCTG CCGGTTGGCC ACTATCGCCC AGCAGGACGG TTTTTTTCAC
AAACCCCGGA TTGATAAAGC ATTGCTACAA AAACACGCCA AAGGCCTGAT CGGTCTGTCT
GCCTGCCTGA AAGGAGAAAT ACCCCACCTG ATCTGCAGGG GCAGGCAGGA CGAAGCCGAT
GCCGCGGCAC GGCAGTATTG CGATATGCTG GGGGACAGAA ATTTTTTTCT GGAAGTCCAG
AACAACGGCC TGCCCGAACA GGAAACGGTC AACAACGCCC TGCTGGACAT GAGCCGGCGA
CTTTCCATCC CCCTGGTGGG CACCAATGAC TGTCATTACC TGGACCCTGA AGACAGCCGT
GCCCACGAGA TTGCCTTATG TCTTCAGACA GGCCAGACCA TCCACGATAC CGACCGGCTT
AAGTTTGATA CCAACCAGCT CAACTTCAAG TCCACCGGGG AGATGTGCGT TTTTCTGGAG
CCCTTTCCCA GGGCCGCGGC CAACACCGTA GCCATTGCAG AGCGGTGCCA GGTGGCCTTT
GACTTCAGCG CCCGGCATTT TCCCGTGCTT GAAACACCAC CGGGCAAGAC CATGGCTGAC
ATGCTTGAAG ATAGCGCCAT GGCCGGCCTG AAAAAACGAT GGCAGCACAT TTGCAAGCAG
AGCAGCCACG CCGATAAATC GGTTTATCAA CAGCGGTTAG CGTATGAGCT GGCTGTAATC
AATGAGATGG GGGCCCCCGG CTACTTTCTG ATCATAGCCG ATTTTATTGC GTATGCTAAA
AACAACGGTA TCCTCACCGG CCCGGGCCGG GGATCTGCGC CCGGCAGCCT GGTCTGTTAC
TGCCTGGGCA TCACCGGTGT TGATCCCATC GAGCACGGTC TGCTGTTTGA ACGGTTTTTG
AACCCGGAAC GAAACGTCAT GCCGGATATC GACGTGGACA TCTGCATTAA CGGCCGGGAA
AAAATACACC AATATCTGAT GGACAAATAC AACCGGGATG ACGGGGAGGA CTATGCGGCC
TGTATCGCAA CTTTAGGCAC CATGAGAAGC AGGGCCGCTC TCCGGGAGGT GGGTCGGGCG
CTGATTATGC CGTTGGACGA CGTGAACAAA GTCGCAAAGC TGATACCGCC TGGCGCCAGA
AGTCTGGACG ACGCCCTGAA AAAAGAGCCG GCCTTGAGGG CACTGATCGA TTCAAAACCA
GAGTTTGGTG AGCTGATGGA CGTCATCCGG AAGCTGGAAG GGTTGCCGTT CCATATTCTT
ATGAACGCCG CCGGGATTGT CTTGAGCGAT AAACCGTTGA CCTGTTACAC GCCCTTATAT
CGTTTTAAAG GTGAAATGAT AACCCAGCTT GACGCCCGGT CGTTGGAAAC CATGGGGTTG
GCCAGGCTGG ACCTGCTGGG CATGAGGGAC CTGACGGTTA TCAGCGATAC CTTGCAACTG
ATAAAGAACC AGGGCCGGCA AACGCCGGAC CTTTCCCGGA TAGACACCAC GGACGCCGCC
ACCTGTCAGC TTCTGTCCAA AGGAGACACT TTCGGTGTGT TTCAGCTTGC AAGCACCGGC
ATGAAAGAGC TGCTGGTAAA AGCCCGGCCG CGATCGCTGT CTGAAGTTGC CGTGCTGATC
GCCCTGTATC GTCCAGGCCT TTTGGAAAAT GGCATGGTTG CAGATTACCT TGGAAGAAAA
CAAGGCCTGA AAGACACAAC TTATCCCACG GCGAAACTGG AACCGATTTT AAAAGAGACC
TGTGGCCTGC CGGTCTATCA GGAGCAGATC ATGCAGGCGG TCCAGGTGCT GGCAGGCTAC
ACGCCGGGAC AATCCGACGA TTTTCGCAAG GCGATGGGAA AAAGGATAGC CGAAAAAATT
GCAGATCACC GCCAACGGTT TATTAACGGC GCCGCCGCCA AAGGCATTGA CAAAGCCACG
GCGTTGCAAC TGTTTGAACA ACTCGAATAC TTTGGCGCCT ATGGATTCAA CAAAGCCCAC
AGCATCGCCT ATGCCTTCAT TGCCTGGCAG ATGGCATGTC TCAAAGCGCA CTTTCCAGCT
GAATTCATGG CGGTGTGGCT GGACATAAGT TTCGGGTGTG TAGACAGGAT CGCCCGCTTA
ATTGGTGAAT GCCGCGACAG CAACATCCCT GTCCTGCCGC CGGATGTCAA TCAAAGTGCC
AGACAATTTA CAGTGGTCAA CGGGCAGATA CGATGCGGTC TGGCATGCGT CAAGAAAACA
GACAAAGGAC TGATAGACGC AATTATTGCC GAGCGCACCG CCGCCGGTCC ATTTGTATCC
CTGTCTGATT TCTGTAACCG CATGTCGGCC GGGCGTCCGG AACTACTGCA GGATAGAAAA
GCTCTTGAAA ACCTGGTCAA AGCCGGTGCG TTTGACAGCA CCGGCGCCAC CCGGTCGCAA
ATGATGGCAG TTCTTGATGA GATTTTGAAG CCGTCACTCG ATCTACAACA GCCCCGAAAG
CCGGCTGTCC CGGCTCTGCC GGAGGTCGGC GAATGGTCCC CACACCTTCG GCGGGCCCTT
GAAAAAAGGG CGATGGGAAT CTGTTTAACC CCGGCGCCCC CGGCATATTG TCATGCAAAA
TTGAAGCGCC CGACTACTAC CCCCCTGTGC TCCATTTACG AAAATCCTCA AGGCGGCCGG
GTCGCTGTCG ATGGTATCTG GAAAGCGGTT GAGTATAAGC AGGGCAAAGA TGGGTGTCCC
ATGGCCCTGG CGGAGCTGGA AGACAACAAT GCGGCAATCG AAGTCGTCAT TCCGGCTGAA
ATTTACGAGT CTGCCCGGCA CGCCTTGCTG CCGGGCAGGC CGGTCATCGT GGAAGGTCGC
TATGAATGTG ATGAAGTTAG AATAAGTCCA TTGCAGGCTG AGCGGATAAT CCCGTTGACC
GATATTACTT TTCCCGGGCT GCCGCAGGGC AAAAAAGAAG ACTTGCCCCG CAGCCTGGCA
TGTCCTTTTT GCGGCCACGC CCAGACATGG CTGCGCATGG AATATGCACC GCCAGAAGAT
TTAAAAACAA GCACGGACAT GGAAATTGCA TGTCAACTGC GTTGTGGGTA CTGCCGGGCT
GTCGGTCCCG TTACTACCGT AGGAATAACC GCTGACCGTG TGCAGGTTGA AATCGCCGCC
ATCGGCCAAT GGAACCAACG TGCCGGTCAT GGAACAGATG ATACCCGGAA GCTGAAGCCC
TGTGCTTTTT GCGGCCATCA TCCCCCCGAC ATAGAATATG TAATTGATCC TGATCCCCTC
GAAGAAATAG AGACCGGGGT AATCAACCAG ATTACCTGTC CGCAATGCGG CGCTGCCGTC
CATTCCATGT GCTTTTGCGA CCCATGTCTG ACAAAGTGGA ACCTGAGACA ATAA
|
|---|
| Protein sequence | MTTVPDQFVH LHVHTCYSLL DGIIRPDDLV ARAVEYKMPA VAITDHGTMF GVIQFYMEAV
RAGIKPIIGC ECYVAPRTIA DKTPADHAGL SHLVLLAETM EGYRNLCRLA TIAQQDGFFH
KPRIDKALLQ KHAKGLIGLS ACLKGEIPHL ICRGRQDEAD AAARQYCDML GDRNFFLEVQ
NNGLPEQETV NNALLDMSRR LSIPLVGTND CHYLDPEDSR AHEIALCLQT GQTIHDTDRL
KFDTNQLNFK STGEMCVFLE PFPRAAANTV AIAERCQVAF DFSARHFPVL ETPPGKTMAD
MLEDSAMAGL KKRWQHICKQ SSHADKSVYQ QRLAYELAVI NEMGAPGYFL IIADFIAYAK
NNGILTGPGR GSAPGSLVCY CLGITGVDPI EHGLLFERFL NPERNVMPDI DVDICINGRE
KIHQYLMDKY NRDDGEDYAA CIATLGTMRS RAALREVGRA LIMPLDDVNK VAKLIPPGAR
SLDDALKKEP ALRALIDSKP EFGELMDVIR KLEGLPFHIL MNAAGIVLSD KPLTCYTPLY
RFKGEMITQL DARSLETMGL ARLDLLGMRD LTVISDTLQL IKNQGRQTPD LSRIDTTDAA
TCQLLSKGDT FGVFQLASTG MKELLVKARP RSLSEVAVLI ALYRPGLLEN GMVADYLGRK
QGLKDTTYPT AKLEPILKET CGLPVYQEQI MQAVQVLAGY TPGQSDDFRK AMGKRIAEKI
ADHRQRFING AAAKGIDKAT ALQLFEQLEY FGAYGFNKAH SIAYAFIAWQ MACLKAHFPA
EFMAVWLDIS FGCVDRIARL IGECRDSNIP VLPPDVNQSA RQFTVVNGQI RCGLACVKKT
DKGLIDAIIA ERTAAGPFVS LSDFCNRMSA GRPELLQDRK ALENLVKAGA FDSTGATRSQ
MMAVLDEILK PSLDLQQPRK PAVPALPEVG EWSPHLRRAL EKRAMGICLT PAPPAYCHAK
LKRPTTTPLC SIYENPQGGR VAVDGIWKAV EYKQGKDGCP MALAELEDNN AAIEVVIPAE
IYESARHALL PGRPVIVEGR YECDEVRISP LQAERIIPLT DITFPGLPQG KKEDLPRSLA
CPFCGHAQTW LRMEYAPPED LKTSTDMEIA CQLRCGYCRA VGPVTTVGIT ADRVQVEIAA
IGQWNQRAGH GTDDTRKLKP CAFCGHHPPD IEYVIDPDPL EEIETGVINQ ITCPQCGAAV
HSMCFCDPCL TKWNLRQ
|
|---|
| |