| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_6823 |
|---|
| Symbol | |
|---|
| ID | 5675136 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 8313517 |
|---|
| End bp | 8315193 |
|---|
| Gene Length | 1677 bp |
|---|
| Protein Length | 558 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641245672 |
|---|
| Product | EmrB/QacA family drug resistance transporter |
|---|
| Protein accession | YP_001511063 |
|---|
| Protein GI | 158318555 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGTCC CCCTCAACCG CCGCCCGAGC CAACGCGCCG TCGTCGCCAC GCTGTTCGTC
GCGACGATGT TCATCACGAT CATGGACACC ACGATCGTCA ACGTGGCGCT CCCCTCCATC
GCGGCCGACC TGGGCGTGAG CTCCGGGTCG ATCGACGAGG TCGTGATCGC CTACCTGGTC
AGCCTGGCCG TCTCCATCCC GGCGTCGGGC TGGCTCGCGG ACAGGTTCGG CAGCCGGCCG
GTGTTTCTCG CCGCGCTGGG CGTGTTCACG GCGGCCTCCG CCCTGTGCGG GCTCGCCGGC
AGCCTCACCG CGCTGGTGGT CTTCCGGGTG CTGCAGGGCG TCGGCGGTGG CCTGCTCACC
CCGGTTGGCA TGGCGATGCT CTACCGGGTC TACCCACCGG CGGAGCGGGC CCGGGCGGCC
CGGATTCTCA TCGTGCCCAC CGTCGTCGCG CCGGCCGTCG GCCCGATCCT CGGCGGGGTG
CTGACCGACC AGGCGTCCTG GCACTGGGTG TTCCTGGTCA ACGTGCCGAT CGGGATCGCC
GCGTTCGGCT TCGGCCTGGC GTTCCTGGCC GGCTCCCGGG TGCCGGGTGC CGGCCGCTTC
GACGCGCTGG GCTTCGTGCT CTCGGCGAGT GGCTTCGCCC TCGTCCTCTA CGCGCTGTCC
GTCGGGCCGA ACCACGGCTG GCTGTCGGCC GGGACCCTCA CGGCCGCCGG GGTCGGGCTC
CTGGCGACCG GGGCCACCGT GTGGTGGGAG CTGCGCCGCA CCCAGCCGCT GCTGGCCCTG
CGGCTACTCG GCAACGACCT GTTCCGCACC GTCAGCCTGA CCCTGTCGAT CGCGTTCATG
GCGTTCATGG GCGTGCTGTT CCTCGTCCCG CTGTTCATGC AGACGGTGCG GGGCGTCAGC
GCGACGACGT CCGGGCTCGT CGTCTTCCCT GAGGCCCTGG GTGTGCTGAC CGCCACCCAG
ATCGCCGGGC GCCTCTACCC GAGGATCGGG CCGCGCCGGC TGATGGCCGG CGGCCTGGTC
TTCGCGGCCG CCTCGATGCT CGCCCTCGGC TTTCTCGACT CGGCCGGATC CCTCTGGCCG
CTGCGCGCGC TGCTGTTCGG GGTCGGCTTC GGTATCGGCT TCGTGATGAT GCCGGCCCAG
ACCGCGGCCT TCGCCACCAT CTCCACGCAG CAGACGGCCC AGGCCTCCGC GCTGTTCAAC
GCGCAGCGCC AGCTCGCCTC CGCGATCGGG GTCGCGCTGG TCTCCACCGC GCTCAGCCTG
GCGCGACCCG CCGCCACGGG GCCCGCCGCC ACGGGGCCCG GCGGCGGGTC GGTCGTCGGC
GACACCGGCT CCTTCCGGTG GGCGTTCGCC GTCGCCGCGG CACTGGCCGC CCTCGGGCTC
CTCGCCGCGC TGCGCGTTCG GGACGCCGAC GCCGCCCCCA CCATGCGCCC ACCCGCGGCG
GTGCCGGCCA CCGCCGCGGA GACCGTCCTA CTCGGGCACG GTAGGGATGA CCAGGGTGGA
GGTTCCAGGG CCGGTGCTGA CGGTCACGTC GACCGGGCTC GCGTTGGGAG TGAGGACGTC
GGCGGCGCCG CCGGAGACCC GGACACCGAT GCGGTGGCCG GCGGCGAAGC GGTGGTGGAC
CGGCCGGATG CCGATCTCGA AGGCGGTGGG CTCCCCGGCG GTCACCGGCG TCGGTGA
|
|---|
| Protein sequence | MDVPLNRRPS QRAVVATLFV ATMFITIMDT TIVNVALPSI AADLGVSSGS IDEVVIAYLV
SLAVSIPASG WLADRFGSRP VFLAALGVFT AASALCGLAG SLTALVVFRV LQGVGGGLLT
PVGMAMLYRV YPPAERARAA RILIVPTVVA PAVGPILGGV LTDQASWHWV FLVNVPIGIA
AFGFGLAFLA GSRVPGAGRF DALGFVLSAS GFALVLYALS VGPNHGWLSA GTLTAAGVGL
LATGATVWWE LRRTQPLLAL RLLGNDLFRT VSLTLSIAFM AFMGVLFLVP LFMQTVRGVS
ATTSGLVVFP EALGVLTATQ IAGRLYPRIG PRRLMAGGLV FAAASMLALG FLDSAGSLWP
LRALLFGVGF GIGFVMMPAQ TAAFATISTQ QTAQASALFN AQRQLASAIG VALVSTALSL
ARPAATGPAA TGPGGGSVVG DTGSFRWAFA VAAALAALGL LAALRVRDAD AAPTMRPPAA
VPATAAETVL LGHGRDDQGG GSRAGADGHV DRARVGSEDV GGAAGDPDTD AVAGGEAVVD
RPDADLEGGG LPGGHRRR
|
|---|
| |