| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_6729 |
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| Symbol | |
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| ID | 5675042 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. EAN1pec |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009921 |
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| Strand | + |
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| Start bp | 8183023 |
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| End bp | 8185515 |
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| Gene Length | 2493 bp |
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| Protein Length | 830 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 641245578 |
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| Product | Type IV secretory pathway VirD4 protein-like protein |
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| Protein accession | YP_001510969 |
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| Protein GI | 158318461 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.577691 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.546954 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGTTG CTGTTTCGGC CCCTCCGCCG GGGCTTCCCC CCGTCCCTCC TCCACCCCCT
CCACCGGCTC CGGAGCTGCC GGTCTGGCTC ACCGACCCCA GCCGGATCGT CTCTGGCTTG
GAGTCGTGGC TGGCCGCCCA CGCCGACTGG TGGCCGGTCG CTGTCCTCGA GCTCGTTCTC
CTGCTGGCCG CGGGGTACGC CCGCCGCCGG GTTCGCGCCC ATCGGCATGT GGTGCTGTGT
GAGGGGGCGC GGACGGTGGA GATCCTCACC CCGCCCGAGG TATCCGCCCA CGCGGCGGAG
ATCTTCTGGG GTCAGATGGG CGGCCTGCAA CGGGCGCGCT GGGACCGGCT CCTGCATGGC
CAGCCGCATC TGGGCTGGGA ACTGCTCGCC ACCCGCGCGG GGACGGTGAT CCGGCTGTGG
GTCCCCGGCC CGGTGCCGCC GGGCATGGTC GAGCGGGCGG TGCAGGCCGC GTGGCCCGGT
GCCCGCACTA CGACCCGGCC TGCCGCCGCG CCGCTGCCGG ACTACGCGCT GGCGATCGGC
GGGCAGCTAC GTCTGGCCCA GGTCGACGTG CTGCCGCTAC GCGCGGACCC GTCCGGGGAC
CCGATCCGGT CCCTGCTGTC TGCCGCCTCC GAACTCGACG ACAACGAGGC GGCGGTGGTG
CAGCTGCTGG CCCGGCCGGT CACGGGCCGC CGGCTCACGC TCGCCCGCCG CGCCGCTGCC
CGCCAGCGGG GCCAGTACGC CCCGACCCTG CTCAGCCGCG CCCTCGACCT GATCACCCCC
CACGCCGGGC CCCGCCCGGC CGCCGGGCAG GTGGTGGGCA AGACGGGGCC GACACCGCCG
GAGGACTCCG CGGCGTCCCG CGCAATCGGC CTCAAAGCAG TCGGCCCCCG CTGGGAAGCC
ACGGTCACCT ACGCCGCAGC TCACCTCGCC CCGCCGATGA CCAAGACCGG GCAGCAGGCC
GCCACGACGA TGCTGCGCGG CCGGGCACAC GCCCTCGCCT CCGCGTTCGC GTTGTACGCC
GGGCACAACT ATCTGCGCCG CCTGAAACTG CCCCACCCCA TCCCCGTGCT GGCGGGCCGC
CGGCTGCGGC GCGGGGACCT GCTCGCGGTC GCCGAACTCG CCGCCCTCGC CCACCTGCCC
CTGGACACCG CTGTCCCGGG GCTGTCCCGG GCCGGGGCCG CGGCCGTCGC GCCCCCGGCC
GGGATCCCCG AAGCCGGACC CCGGGTCAAG CCGCTAGGGG AGAGCGAAGC GGGCCGGCGC
CGCCGGGTCG GGTTGAACGT CGCCGACGCC CGCCATCACG TGCACGTCGT CGGCGCGACC
GGGTCGGGGA AATCGACGCT GCTCGCGAAC ATGATCCTCG CCGATGCGGA AGCCGGCCGG
GGGCTGGCGG TCTTCGACCC GAAAGGCGAC CTGGTCAACG ACGTCCTCGC CCGCCTCCCC
GCGGACGCCG CTGACCGGGT CGTGCTCCTC GACCCCGAGG ACGCTGCCGC CCCACCCTGC
TTGAACATCC TCGACGGCGG CGACGCCGAT CTGGCCACCG ACCAGCTGGT CGGGATCTTC
CGGCGGATCT GGGCCGACTC CTGGGGGCCG CGGACCGATG ACCTGCTGCG CGCCACCTGC
CTGACCCTGC TGGAACGGCG CACCCGCACC GGGATCACCC CGACGTTGGG CGACGTCGTC
AAGGTCCTCA CCGAACCGGA CACACGACGT AAAGCCACCA CCGGAGTCAC CGACCCGATC
CTCGCCAGCT TCTGGGAGTG GTACGGGCAG CTGTCTGACG GTGCCCGCGC GGCGGCGATC
GGCCCGATCC TGAACAAACT CCGCGCCCTG CTGCTCCGCA CCTTCGCCCG CCAAGCCCTG
GCCGCCGGCC CGTCCACCGT CGACCTACGC GAGGTCCTCG ACCGCGGCGG GATCCTCCTC
GTACGCATCC CCAAAGGCGT GATCGGGGAG GACGCCTCCC GGATCGTCGG GTCGATCGTG
TTGGCGAAGA TCTGGCAGAC CGTCCTACAC CGGGCCCGCC TGCACCCCGA CCAGCGCCCC
GACGCCACCT GTTTTTTGGA CGAAGCCCAA AACTTCCTCA CGCTGCCGGG GGCGGTGGAG
GACATGCTCG CCGAGGCCCG CGGCTACCGG CTGTCCATGA CCCTGGCCCA CCAGCACCTG
CGTCAACTCC CCGACGATTT GGCCGACGCC CTGTCCACCA ACGCGCGCAG CAAACTGTTC
TTCGGCGTCA GCCCGAAAGA CGCCGCGGAC CTGTCCCGGC ATGTCAGCCC CGTCCTGACC
CAGCATGACC TCGCCCGGCT CCCCGCGTGG ACGGCCGCAG CCCGGCTGGT GGTCGACCAG
GCCGACACCG CGGCGTTCAC CCTGCGGACC CGGCCTCTGC CACCACCTGT CGCTGGCCGC
GCTGATGCGC TGCGGGTTGC GGCACGCCGG CACACCGGCG CACCCGATGC CGGGCGCGGC
CCCCGGTCCG GTCAGGGCGG GGGTGGCCAG TGA
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| Protein sequence | MIVAVSAPPP GLPPVPPPPP PPAPELPVWL TDPSRIVSGL ESWLAAHADW WPVAVLELVL
LLAAGYARRR VRAHRHVVLC EGARTVEILT PPEVSAHAAE IFWGQMGGLQ RARWDRLLHG
QPHLGWELLA TRAGTVIRLW VPGPVPPGMV ERAVQAAWPG ARTTTRPAAA PLPDYALAIG
GQLRLAQVDV LPLRADPSGD PIRSLLSAAS ELDDNEAAVV QLLARPVTGR RLTLARRAAA
RQRGQYAPTL LSRALDLITP HAGPRPAAGQ VVGKTGPTPP EDSAASRAIG LKAVGPRWEA
TVTYAAAHLA PPMTKTGQQA ATTMLRGRAH ALASAFALYA GHNYLRRLKL PHPIPVLAGR
RLRRGDLLAV AELAALAHLP LDTAVPGLSR AGAAAVAPPA GIPEAGPRVK PLGESEAGRR
RRVGLNVADA RHHVHVVGAT GSGKSTLLAN MILADAEAGR GLAVFDPKGD LVNDVLARLP
ADAADRVVLL DPEDAAAPPC LNILDGGDAD LATDQLVGIF RRIWADSWGP RTDDLLRATC
LTLLERRTRT GITPTLGDVV KVLTEPDTRR KATTGVTDPI LASFWEWYGQ LSDGARAAAI
GPILNKLRAL LLRTFARQAL AAGPSTVDLR EVLDRGGILL VRIPKGVIGE DASRIVGSIV
LAKIWQTVLH RARLHPDQRP DATCFLDEAQ NFLTLPGAVE DMLAEARGYR LSMTLAHQHL
RQLPDDLADA LSTNARSKLF FGVSPKDAAD LSRHVSPVLT QHDLARLPAW TAAARLVVDQ
ADTAAFTLRT RPLPPPVAGR ADALRVAARR HTGAPDAGRG PRSGQGGGGQ
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