| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_6546 |
|---|
| Symbol | |
|---|
| ID | 5674861 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 7961386 |
|---|
| End bp | 7962858 |
|---|
| Gene Length | 1473 bp |
|---|
| Protein Length | 490 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641245395 |
|---|
| Product | UDP-glucose 6-dehydrogenase |
|---|
| Protein accession | YP_001510789 |
|---|
| Protein GI | 158318281 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1004] Predicted UDP-glucose 6-dehydrogenase |
|---|
| TIGRFAM ID | [TIGR03026] nucleotide sugar dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.255924 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGAGC AGCGGGTAAC TGGCGAGCAG TCGATAACTG TGATTGGTAG CGGATATCTT
GGCGCCACGC ATGCCGTATG CATGGCCGAA CTCGGTTGCC GGGTGCTGGC CGTCGACGTC
GACACAGCGA AGGTGGCCCG GCTCGCGGGC GGTACGGCTC CTTTCTTCGA GCCGGGTCTG
GAACCACTGC TCCGCAAGAA CCTTGAAACC GGCCGGCTGC GTTTCACCAC GTCGTATGAC
GAGGTGGCCG AGTTCGGGGA CGTGCACTTC CTGTGCGTGA ACACACCACA GCGCGGCGAC
GGCTACGCGG CGGACCTGAG CTACCTGGAC GCCGCGGTGG CAGCGTTGGC ACCACGGCTG
CGGCGGGACT GTCTGGTCGT CGGAAAGTCC ACGGTGCCGG TGGGCACCGC TGCCGCCCTG
GCGGGGAGGC TCGCGAGGCT GGCTCCGGTC GGGGAAGGCG CCGAGCTGGC CTGGAACCCG
GAGTTCCTTC GCGAGGGCTT CGGAGTGGAG GATTCTCTGC GGCCGGATCG GCTCGTGTTC
GGGGTGACCT CGCTGGCGGC CGAGACCCGG CTGCGGCGTG TCTTCGCGCC GATCATCGAT
GCGGGTGCAC CGGTCATCGT CACCGACTAC GCCACCGCTG AACTGGTGAA GGTCGCCGCG
AACTCCTTCC TGGCCACGAA GATCTCGTTC ATCAACGCGA TGGCGGAGGT GTGCGAGGCG
ACCGGAGCGG ATGTGCTCAC CCTGGCGGCG GCGCTTGGTC AGGATCCACG GATCGGCAGC
CGGTTCCTGC GCCCGGGAGT CGGCTTCGGC GGCGGCTGCC TACCGAAGGA CATTCGTGCC
TTCGTCGCCC GGGCCGACGA GCTCGGCGTC GGCCGGGCGC TGTCGTTCCT CCGGGAGGTC
GACACGATCA ACCTGCGACG GCGGACACGG GTCGTGGACC TGGTCCGGGC AGCGGCCGGG
GCGAGCCTCG ACGGGTGCCC GATCGCGGTC CTCGGCACCG CGTTCAAGCC GAACTCGGAC
GACGTACGCG ACTCACCCGC GCTCGACGTG GCGGCGACGT TGCACCGGCT CGGTGCAGCG
GTGACGGTGT ACGACCCGGC GGCCAACGAC AACGCCCGCC GGGTCCATCC AGAGCTGGGG
TACGCGGATT CGGTGCCGGC GGCGGTCGCC GGCGCGGATG CTGTGGTGGT GCTCACCGAG
TGGGCCCAGT TCGCCGAGTT GGGCCCGGTG GAACTGGCGG GCCTCGTTCG CCGCCGGGCC
GTCGTCGACG CTCGGCATTG CCTCGACCGC GACCGCTGGC GCGACGCCGG CTGGGACTAT
CGCGCGCCGG GACGTCCCGC GGCCCTTCCC TGGGCACCGC CGGCTGTACC CGCGCAGCGC
GCCGCGCAGC CGCACTCGCC GTCCCAGCGA CACTCGCAAC CAAAGGTGCC CCCGCGGCTG
GCTGCCGGTC TCGCCACCGA TCAATCATTC TGA
|
|---|
| Protein sequence | MDEQRVTGEQ SITVIGSGYL GATHAVCMAE LGCRVLAVDV DTAKVARLAG GTAPFFEPGL
EPLLRKNLET GRLRFTTSYD EVAEFGDVHF LCVNTPQRGD GYAADLSYLD AAVAALAPRL
RRDCLVVGKS TVPVGTAAAL AGRLARLAPV GEGAELAWNP EFLREGFGVE DSLRPDRLVF
GVTSLAAETR LRRVFAPIID AGAPVIVTDY ATAELVKVAA NSFLATKISF INAMAEVCEA
TGADVLTLAA ALGQDPRIGS RFLRPGVGFG GGCLPKDIRA FVARADELGV GRALSFLREV
DTINLRRRTR VVDLVRAAAG ASLDGCPIAV LGTAFKPNSD DVRDSPALDV AATLHRLGAA
VTVYDPAAND NARRVHPELG YADSVPAAVA GADAVVVLTE WAQFAELGPV ELAGLVRRRA
VVDARHCLDR DRWRDAGWDY RAPGRPAALP WAPPAVPAQR AAQPHSPSQR HSQPKVPPRL
AAGLATDQSF
|
|---|
| |