Gene Franean1_6519 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_6519 
Symbol 
ID5674834 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp7927452 
End bp7927931 
Gene Length480 bp 
Protein Length159 aa 
Translation table11 
GC content72% 
IMG OID641245367 
ProductNUDIX hydrolase 
Protein accessionYP_001510762 
Protein GI158318254 
COG category[L] Replication, recombination and repair
[R] General function prediction only 
COG ID[COG0494] NTP pyrophosphohydrolases including oxidative damage repair enzymes 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.170326 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.052102 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCGTCC TCCGCCGTGC CGCCCGGGTC ATCCTGTTCG ATCCCGCCGA CGCCTTCCTG 
CTCATCCGGT CGCACGATCC GGATCTTCCC GACGGGCCCA CCTGGTGGCA TGTACCAGGC
GGTGGCCTCG ATCCGGGGGA GGAGCCGGCG CAGGCCGGGG TGCGGGAGAT CCGGGAGGAG
GTCGGGGTGA CCGTCGCCGA CCTCGGGCCC TGCGTCGCCA CCCGGACGGC CTATTTCACC
TTCCTCGGCG TGGACTACCG GCAGGAGGAG TCCTTCTTCG TGGCGCGCCT GCCGAACCGG
GTCGACGTGG ACGACGCGGC GTGGAGCGAC GTGGAGCGCC GGGCCACTCT CGGCTGGCGT
TGGTGGACCC TCCCGGAGCT GGGATCCACC CCCGACACGG TCTACCCGCC CGCCCTGGCC
CCCTTCCTCA CCTCCTGGCT CACCGCCGGC CCTCCCGAGA CCCCCTACTC CCTCACCTGA
 
Protein sequence
MPVLRRAARV ILFDPADAFL LIRSHDPDLP DGPTWWHVPG GGLDPGEEPA QAGVREIREE 
VGVTVADLGP CVATRTAYFT FLGVDYRQEE SFFVARLPNR VDVDDAAWSD VERRATLGWR
WWTLPELGST PDTVYPPALA PFLTSWLTAG PPETPYSLT