| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_6474 |
|---|
| Symbol | |
|---|
| ID | 5674789 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 7870130 |
|---|
| End bp | 7871302 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641245322 |
|---|
| Product | extracellular ligand-binding receptor |
|---|
| Protein accession | YP_001510717 |
|---|
| Protein GI | 158318209 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0864936 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCAGGC GACCGGCCCT GGGCGCGATC GTCGCCGCCG CCATGACGGT GATGATCGTC
GCGGCCTGCG GCGGTGATGG TGTCTCCTCG TCCGGCGACC GCCGCCGGAC GGTCACCATC
GGGTTCCAGG GCGTGCTGTC GGGCGACGAC GAGCAGCTGG GTGTCAACGC CCTCTACGGG
GTGCGCACGG CGATCGAGGA GATCAACGCG GACGCCAGCC TGCCGTTCCG GGTCGAGCTC
GTCTCCTCCG ACGACGGCGG GTCACCCGAG CGGGCGCCGG CCGCCGCGCG CAGGCTCATC
GACGACTCCG ATGCGGTGGC CGTCATCGGC CCGATGCTCT CGGACGCGAC AGAGGCCAGC
GAGCCGTTCT ACAGCGAGGC CGGCCTGCTC TCGGTCAGCC CGTCCGCCAC CGCCCCGGCG
CTCACCGACC TCGGCTTCAC CACCTTCTAC CGGGTCGTCG CCCCCGACTC CGTGCAGGGC
CGGGCCGCGG CCGACTACAT CTCCACCGTC CTCGACGCGG GGAAGGTGTA CTCGGTCGAC
GACCGCAGCG AGTACGGCAT CGGCCTGTCC ACCGCGCTGG AGGCGGAGCT GTTCTCCGAC
GGCGTCGACG TCGTCCACGG CGGCGTCGAC CCGGCCCGGG ACTACACCCG CGAGGCAGCG
GAGATCATCG CTGAGGCGCC GGACGTACTC TTCTACTCCG GTCAGTACGC CGACTTCGCG
CTGCTCAACA AGGCGCTCGA GGACGGTGGC TTCACGGGCA CCGTCATGGG CGGGGACGCG
ACCCGTGACC CGGACTTCGT CACGCGGACG GGCGCGGCTG CCGCCGAGGG CGCCTACTTC
TCGTGCGCCT GCAGCGACGT CGACACCGAC CCGGCGGCGA AGGAGTTCGT GGCCTCGTAC
AAGGACGTCA ACGGCGGGGC GTTGCCCGGG ACCTACTCGG GGGAGGCCTA CGACGCCACC
TGGGCCGTCG TCGACGTCCT GAAGCGGCTC GGGAACAACA TCAGCCGGGA GTCCGTCGCG
CGGGCCTTCC GCACCGTCAG CTGGGACGGC CTCACCAGGA AGATCGAGTT CGAGGAGAAC
GGCGAGCTCA AGCGCTCGAC CGTCTACCTG TACAAGGTGC AGGACGGTGA GATCACGGAT
CTTGGACGGA TCTCGGACCT GATCGGCTCC TGA
|
|---|
| Protein sequence | MIRRPALGAI VAAAMTVMIV AACGGDGVSS SGDRRRTVTI GFQGVLSGDD EQLGVNALYG
VRTAIEEINA DASLPFRVEL VSSDDGGSPE RAPAAARRLI DDSDAVAVIG PMLSDATEAS
EPFYSEAGLL SVSPSATAPA LTDLGFTTFY RVVAPDSVQG RAAADYISTV LDAGKVYSVD
DRSEYGIGLS TALEAELFSD GVDVVHGGVD PARDYTREAA EIIAEAPDVL FYSGQYADFA
LLNKALEDGG FTGTVMGGDA TRDPDFVTRT GAAAAEGAYF SCACSDVDTD PAAKEFVASY
KDVNGGALPG TYSGEAYDAT WAVVDVLKRL GNNISRESVA RAFRTVSWDG LTRKIEFEEN
GELKRSTVYL YKVQDGEITD LGRISDLIGS
|
|---|
| |