| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_6218 |
|---|
| Symbol | |
|---|
| ID | 5674537 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 7551665 |
|---|
| End bp | 7552501 |
|---|
| Gene Length | 837 bp |
|---|
| Protein Length | 278 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641245070 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_001510466 |
|---|
| Protein GI | 158317958 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.480822 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGTGTTGG ATGGCCTGGT GAAGCGGCGA TCATCTGTGG AGACCACCCT GCGGTCCGAC
TCGCCCGGGT CCGGGGCCGT GCTTCCGGCG GATCCCGCGG ATCCCGCGGA TCCCGCGTCT
TCGGGCGAAC CGGTCGCGCC CGGATCGGTG CGCTGGTGGG TGGATCGCGC GGCGGTCGAG
GCCCGGCGCA AGCCCCGCGC CGGGGGCCTG TCCACGGCCC GCATCATCGA CACCGCGCTG
GAGATCCTCC GGGAGGGCGG ACTGGACGCG CTCTCCGTGC GGGCCGTCGC CGTGCGGCTC
GGCACCAGCG CCGGATCCCT CTACCGGCAC ATCGCCAGCC GCGACGAGCT CGTCGCGCTG
ATCGCCGACC AGGTGATGGG CGGCATCCGC CTCGACCGCA CCGGCCGGGG ATGGCGCGCC
GACGTCGAGG CGCTCATGCG CGAGATGCGA CGGGTCTTCC TCGAACAACC CCTCCCCCCG
TCCGCGACCA GGGGGGAGGC GTACGGGCCG AACATGCTCC GCGTGGTCGA CGCCGCCCTC
GGACTCTTCC TGGAGGCCGG ACTGACCAAC GAGCAGGCCG CCTACGCCAC CTCGACCACA
CTGAAATTCG TCGCCGCCGC CACCAGCATC CAGCGCAGTG CCGCCAGCCG GGCGACGGGC
CGAAAAGCCG GAGGTGCCGA CTTCGGCCAG CTTCTCGACG CACTGCCCGC CGGCCAGTTC
ACCGCACTGC ACACGGCCGG ACCGATCTAC GCAGACATCT CCGCCGACGA TGTCTTCACC
CACGGCATGG CGATCCTCCT CGACGGCGTG TCCAGCCAAC GCCCCGACGG GGGCTGA
|
|---|
| Protein sequence | MVLDGLVKRR SSVETTLRSD SPGSGAVLPA DPADPADPAS SGEPVAPGSV RWWVDRAAVE
ARRKPRAGGL STARIIDTAL EILREGGLDA LSVRAVAVRL GTSAGSLYRH IASRDELVAL
IADQVMGGIR LDRTGRGWRA DVEALMREMR RVFLEQPLPP SATRGEAYGP NMLRVVDAAL
GLFLEAGLTN EQAAYATSTT LKFVAAATSI QRSAASRATG RKAGGADFGQ LLDALPAGQF
TALHTAGPIY ADISADDVFT HGMAILLDGV SSQRPDGG
|
|---|
| |