| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5875 |
|---|
| Symbol | |
|---|
| ID | 5674198 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 7130656 |
|---|
| End bp | 7133211 |
|---|
| Gene Length | 2556 bp |
|---|
| Protein Length | 851 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 77% |
|---|
| IMG OID | 641244725 |
|---|
| Product | putative signal transduction histidine kinase |
|---|
| Protein accession | YP_001510127 |
|---|
| Protein GI | 158317619 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4585] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.339217 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.551311 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCGGCAA ATGCCCTCCA TGCACTCGAT ACGGTCATGG TGCGCGCGTT CGCGGTTCTC
CGTGTGCTGA ATGTCGCCGT TATCGTCGGC TACGTCGCCG TGTGGTGGTC CTGGTATGCG
GAGCATCCGG CCGGGCTCGC CGCGGCCGTG GTCACCGCGG GCTGGGGTGT CTTCTTCGTG
GTGGTGTGCC TCGCCCGCCA CGCGCTCCCC CGCCCCGTCG TCGCCGGAAA CGTGGCCCTC
GCGGTCGTCG CCAGCGCCGG CGCGGTGCTC TGGCTGCCTC CGGCCTCGGT CGGTGGCTTC
GGCACCTGGG TGCTCTCCAC CGTGACCCAC GCGGCGCTGG TCGCCGCGGC GGTGTACGGC
CGCCGCACCC ACGCCGTCGT GGTCGCGGCG ATGGTCGCGG CGTTCCTCTG CGGCGCGGCG
GTCGCTCAGG CCACGTTGGA CGATCCCGCC CTCGGCGGGA ACCACACCCC GCTGAAACGA
GCGGTCATCG GGGTCGTGCT GCTCGCCGGG CTCGCGCAGC TCTTCCGACT GGCCGTCGAC
CGGCTGCGGG CGATCGCGCT CGACGCCGAT GCCCGGCTGA CCGCGGCCGC GGCCGAGCAG
GAGGTGGCCG CGGTCGCCGC GGCCCGGCTG CGGGACGAGC GCGAACGGGA GCGGGTGCTG
CACGACACCG TCCTGAACAC GCTCACCGGC ATCGCCTGGG GCGGCGGCGC CCCCCAGGGC
GGGCCGCTGG TGGGGCCCGG GCACCTCACC GCTGAGCAGT GCCGCCACGC GATCGAGGCC
GTCCGGTCGA TGCTGGACGG CACCGCCGGC GGAACGCGCG ACCTGGCCCA GCCGATGCGG
CGGGTGGTCG CCGTCGCGCG GGCCCGCGGC CTGCGGGTGG ACGTCCGGGC CCTGCCCACG
ACGGATCTTC CCGACAAGGT GGTGGCGGCG CTGGCCGGGG CGGCCCAGGA GCTCCTCGCC
AACGTGCGCC GGCACGCCGG GACGGACCGC GCCGCGCTCG AGGTGCGCTG GCGGCGCGCC
GACGGGGCGG TCACCGTCAT CGTGTCGGAC GAGGGGATCG GGTTCGCGGC CCGGGCCGTC
CCCGGCGACC GGCTCGGCCT GGCCCGGTCG GTGCACGCGC GGATGGCCGA GATCGGCGGG
CGGGCCACCA TCACGTCCGA GCCGGGTCAC GGGACCACCG TGCAGCTGAC CTGGAGCGAC
GGGGAGATCG GCGGGGCCCG GCCGGCGGCC CGCCACTGCG CCCGCCCGGC CGGCCGCCGG
CCGGCCCACC GCAGGAGCAT GCGCCCGCCG CGGCGCGACC GGTGGGCCGG CTGGGCTGGG
CGCCGGTGGG AGGCGGCCCG GGCCGCCTCG CGGGCCCGGG TGCCGGCCGG CGGTACGGCC
GCCGAGCTCC GGGACTCCTA CGCCGCCGGC CTGCGCCGGA CGGTCGCCGC CGTGACGGCG
GTCTGGTTCA CCTGCACCGT CTTCGTCCTG GCCTTCGTCG CGCCGTCCAG CCGATCGGTG
CCCGTCGCCG TGCTGCACTG GCTGGCGATG GCCCTCGTCG TGCTGCCTGC CGCCTGGACC
GCCTACCACC GGCCGCTGCG CCGCACCGAG GCGATCGTCC TGATGGCGCT GGCGCTGGCG
GTGACGGCGG CGGTCGGCTT CAACATCGCA CCCGTCCACA CTGATACCGC AGCGGGGACG
GGCGGGCCGC CGAGCAGGAT CAGCACCTGG CCGGTTCTCG TCCTGCCGCT GCTGCTGGCG
TTGCTCGCCG TGTCCCGGCT GTTCGTCGAG TGGATCGTGG CGATCGCCGC CACCGTGACG
GTGCTTGACC TGCTCGTGCT CAGGGGCGCG GGCACCGGCC CGCTCGCGCT CGCGCAGCTG
CTGACCGCGA CGAACGGCCA GATCGCGATA CAGGTCATGG TGTCGATGGG CGGTCCGCTG
CTGCGGCGCA CCGCGGACCA GGTCGCCCGC GCCGTCGAGG CGGAGACCAC GCAGGCCGCG
GCCACGCGGT CCACGGCCGC GATCCGGCAG GACCGGGCCC GCGGCCTCGC CACGGTCGAG
CGGGAGGTGC TGCCGCTGCT GGAGGCGGTC GCCGACGGGC TGCTCGACCC CGGTGACCCG
GCGGTGCGCG AGCGGTGCGG CCGGCACGCG ACGGCCGTCC GGCGGGCGTT GGTGACGGGT
GCGACCGGGG CGCTGGGCAG TCTCGCAGAG CCCGTCTTCG AGGCGCGGGC GCGCGGGCTG
GACCTTGAGG TGCAGGTGGT TGGCGAGGCA CCGCGGATTC CCGCGCGGGT GAGCGAGCGG
CTCGCCGCCA TGCTGCCCGG GCTGCTGCGC GCCGTCCCGG CGGCGGGGGC GGAGCACGCC
GTCCTCACGC TGATCTGCGA GGAGGGCGAC GGGCGGCTGT TCCTGACCTA TCCGGCGGCG
GCCCCGCCGG AGCTGACCGC GCTGACCGGG ATCGCCGGTG GCGAGGTGTT CCCGGTCAGC
GCGGTGCTCT CGGTCAGCGC GGACGCCGAC GACGGTCAGG TGTGCGTGGA GGTCGCCTGG
TCGGCCGGCC GGGAGGTCAG GCTCGGTCGG AGCTGA
|
|---|
| Protein sequence | MPANALHALD TVMVRAFAVL RVLNVAVIVG YVAVWWSWYA EHPAGLAAAV VTAGWGVFFV
VVCLARHALP RPVVAGNVAL AVVASAGAVL WLPPASVGGF GTWVLSTVTH AALVAAAVYG
RRTHAVVVAA MVAAFLCGAA VAQATLDDPA LGGNHTPLKR AVIGVVLLAG LAQLFRLAVD
RLRAIALDAD ARLTAAAAEQ EVAAVAAARL RDERERERVL HDTVLNTLTG IAWGGGAPQG
GPLVGPGHLT AEQCRHAIEA VRSMLDGTAG GTRDLAQPMR RVVAVARARG LRVDVRALPT
TDLPDKVVAA LAGAAQELLA NVRRHAGTDR AALEVRWRRA DGAVTVIVSD EGIGFAARAV
PGDRLGLARS VHARMAEIGG RATITSEPGH GTTVQLTWSD GEIGGARPAA RHCARPAGRR
PAHRRSMRPP RRDRWAGWAG RRWEAARAAS RARVPAGGTA AELRDSYAAG LRRTVAAVTA
VWFTCTVFVL AFVAPSSRSV PVAVLHWLAM ALVVLPAAWT AYHRPLRRTE AIVLMALALA
VTAAVGFNIA PVHTDTAAGT GGPPSRISTW PVLVLPLLLA LLAVSRLFVE WIVAIAATVT
VLDLLVLRGA GTGPLALAQL LTATNGQIAI QVMVSMGGPL LRRTADQVAR AVEAETTQAA
ATRSTAAIRQ DRARGLATVE REVLPLLEAV ADGLLDPGDP AVRERCGRHA TAVRRALVTG
ATGALGSLAE PVFEARARGL DLEVQVVGEA PRIPARVSER LAAMLPGLLR AVPAAGAEHA
VLTLICEEGD GRLFLTYPAA APPELTALTG IAGGEVFPVS AVLSVSADAD DGQVCVEVAW
SAGREVRLGR S
|
|---|
| |