| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5293 |
|---|
| Symbol | |
|---|
| ID | 5673627 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 6366764 |
|---|
| End bp | 6368662 |
|---|
| Gene Length | 1899 bp |
|---|
| Protein Length | 632 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641244150 |
|---|
| Product | stage II sporulation E family protein |
|---|
| Protein accession | YP_001509557 |
|---|
| Protein GI | 158317049 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.948365 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGGTGAGA CGGCGGGTCT GCGCAGCGGT ATCCGCGTGC TCGTCACGAT CTCCACGATC
GCCGTAGCCG TGATGCTCGC GCTCGCCGTG TTCGCCGCGT TGCGCGCGAA CAACGCGGCT
GCCGAGCGCG GCGAGCGGCT CGACCCGGCG GCGACGACCA CCGCTCTCCT GCTCGCCGAC
TTCGTCGACC AGGAGAGCGC CGTCCGCGGC TATCTCATTA CCGAGGAGCC GAGCTTCCTC
GGCCCGTACA ACGAGTCCGA TCGCACGATT CCCCAGCAGA TGAACCGGCT ACAGCAACTG
CTGGCCGAGT TCCCCGACCT CATCCAGGGC ACCGCCGAGA TCGAGGCCGC CTATCAGGCG
TGGCGCAGTG ATGTCGCCGA ACCCGAGGTC GCCGCGATGG AGGTCGGCGA CGTCCAGATC
GCGCGGAACA TCGAAAAGGC CGGCGGCAGG GTGCGCTTCA ACGAGCTGCG CGGCCGGGTG
GCGGATCTCG GGATAGCGAT CGACAACGAG CAGACCGCGG CGTCCGGGCG GCTGGAGAGC
GCCGCGGTCC TCCTCCTCAG CTCACTGGCG AGCGCCGCGT TTGTGATTCT CGGCGTGGTA
CTCACGGTGT TGACCGTGCT GCGCAGGTGG CTGCTGCGCC CCATCGACGC CCTGCGCCGG
GCGGTGAACG CCGTCGCTGC CGGCCGGTAC GACACCAGGA TCCCCGAGGT CGGGCCGGAG
GAGATCGTCG AGCTCGCCGG CAACATCGAG GCGATGCGCG CGCAGCTCGT CCGGCTCGTG
CGGCAGAACG AGCGGTCATG GGAGGCCCTC GCCCAGCAGG GGCCGGCGGT GGTCGCGTTG
CGTGACGCGC TCACACCTTC CGTGCTGCGG GCGCCTGGGC TGGTGCTGCG GGGACGGGTC
GACCCGGCGC AGGGCGAGCT CGCTGGCGAC TGGTACGACT CCTTCGAGCT CCCGGACGGA
CGGGTCGGGA TCGTGGTCGG TGACGTCTCC GGCCATGGCG CTGTGGCCGG TGTCTTCGCG
TTGCGCCTCA AGCAGCTCCT CGACGCCGCG CTGACCCGGG GCGCCGATCC CGGCCAGGCG
ATCGAGTGGG TCGTCGACAG CCTCGGGGAG ACCGACGAGA TGTTCGCGAC CGCGGTGGTC
GCGGTGGTCG ACCCTGCCAG TGGGGAGGTC CGGCTCGCCA ACGCGGGCCA TCCGGACGCG
CTGCTGCTGC GCCGGGCGCG TCGCGCCGGG ACCGCGGGCG ACGTCGGAGA GGGCGCGCCC
AGGGCGGGGG AGCCCGCCGG TCCGCGGACG GTTGTCGCCG TCGCCGGCAC GTTCGTCGCC
GGTGCCGTCG TCGGCGAGAC CATCGAGGGC GAGGCCGTCG AGTGCGATGC CGCCGGGGAG
GCGCGGGAGC CAGGACTGGC CTCGGCGGTG GCCCGCGCCG GGTCCGCCGG CGGAGGCGTC
GGTGACGGCG CTGGCAGCGG CAGCGGTGGC AGCGGCGCTG GCGCGGGCAG CGGTGGTGGT
GGCGGGGCTG GGGGCCCGGG ACTCCCGGAA GCGGGGCCGG GACGGCCACA GGCCGCCGGC
CGCCGTGCGG AGGTGGCCTG CCTGGCCGCC ACCGGGCCGA TCATGTCGAG CCTGGTCGCC
GCCGACGGCG CGTGGCACAC CGACGTGCTG CGGCTGGAAC CCGGCGACGT GCTGTTCGTG
TACACCGACG GGCTGGTGGA GGCCAGGAAC GCGGCCCACC AGCAGTTCGG CGTCGATCGG
CTCGTCGCCG AGCTGCTGCG CGACCCGCGG CGGGCGCCGG CCGAGCTGTT GGATGACGCG
TTCGAGGTCG TGCGGCGCCA CGCCCCGGGC CGGCCGAGCG ACGACCGCAC CGCGATCGTC
GTCGCCCGCA CCACCGAGGT CTCCCGCCCG CGCCCCTGA
|
|---|
| Protein sequence | MGETAGLRSG IRVLVTISTI AVAVMLALAV FAALRANNAA AERGERLDPA ATTTALLLAD
FVDQESAVRG YLITEEPSFL GPYNESDRTI PQQMNRLQQL LAEFPDLIQG TAEIEAAYQA
WRSDVAEPEV AAMEVGDVQI ARNIEKAGGR VRFNELRGRV ADLGIAIDNE QTAASGRLES
AAVLLLSSLA SAAFVILGVV LTVLTVLRRW LLRPIDALRR AVNAVAAGRY DTRIPEVGPE
EIVELAGNIE AMRAQLVRLV RQNERSWEAL AQQGPAVVAL RDALTPSVLR APGLVLRGRV
DPAQGELAGD WYDSFELPDG RVGIVVGDVS GHGAVAGVFA LRLKQLLDAA LTRGADPGQA
IEWVVDSLGE TDEMFATAVV AVVDPASGEV RLANAGHPDA LLLRRARRAG TAGDVGEGAP
RAGEPAGPRT VVAVAGTFVA GAVVGETIEG EAVECDAAGE AREPGLASAV ARAGSAGGGV
GDGAGSGSGG SGAGAGSGGG GGAGGPGLPE AGPGRPQAAG RRAEVACLAA TGPIMSSLVA
ADGAWHTDVL RLEPGDVLFV YTDGLVEARN AAHQQFGVDR LVAELLRDPR RAPAELLDDA
FEVVRRHAPG RPSDDRTAIV VARTTEVSRP RP
|
|---|
| |