| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5184 |
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| Symbol | |
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| ID | 5673518 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. EAN1pec |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009921 |
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| Strand | - |
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| Start bp | 6222873 |
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| End bp | 6224825 |
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| Gene Length | 1953 bp |
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| Protein Length | 650 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641244038 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_001509448 |
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| Protein GI | 158316940 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.525192 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCGCTTC TGTCGACGAT CGACAGCCCG CAGGACGTCA AGCGCCTCGA CCATGAGGAG
CTGGTGACGC TCGCGGCTGA GATCCGTGAT TTCCTCATCC ACGCGGTTGC CCGCACAGGC
GGCCACCTAG GGCCGAATCT GGGCGCTGTA GAACTGACTC TCGCAATCCA CCGAGTGTTC
GATTCACCAT TCGACCGTGT CCTCTGGGAC ACGGGCCACC AGTCCTATGT TCACAAGATT
CTGACCGGCC GCCGGGAGCA GTTCGACCGC CTCCGTCAAC GCGGCGGGCT CTCCGGCTAC
CCGAGCCAGG CCGAGTCCGA GCACGACATC ATCGAGAACT CGCACGCCTC CACGGCGCTG
TCGTACGCCG ACGGGCTGTC CCGCGCCTAC GAGCTGCGCG GGGAGAACCG GGCCGTCGTC
GCGGTCGTCG GCGACGGGGC GCTGACCGGC GGAATGTGCT GGGAGGCGCT GAACAACATC
GCCGCCAGCG ACCGGCAGGT CGTCATCGTC GTCAACGACA ACGGCCGGTC CTACTCACCC
ACCATCGGCG GCCTCGCCGA CCACCTCGCG TCGCTGCGCC TGGCGCCCGA GTACGAGCAG
GTCCTGGACG TCGTCAAGCA GGTGCTGGGC CGCACCCCGC TCGTCGGCGC ACCGCTGTTC
GACGCCCTGC ACGGCATCAA GAAGGGCATC AAGGACGTCG TCACCCCGCA GGGCATGTTC
GAGGACCTCG GGCTGAAGTA CGTCGGCCCG GTCGACGGCC ACGACGTGGT CGCCATGGAG
TCGGCGCTGC GCCGGGCCAA GGACTTCGGC GGCCCGGTGA TCGTCCACGC CATGACCCGC
AAGGGCTTCG GGTACCCGGC GGCCGAGCAG GACGACGCCG ACAACTTCCA CGCCGTCGGC
GTCATCGACC CGGTGACCGG CAAGCCGAAG TCGGCGTCCA AGGGCACCAC CTGGACCTCG
ATCTTCTCCG AGGAGATCGT CCGGATCGGC TCCGAGCGGC CCGACGTGGT CACCATGACC
GCGGCGATGC TCCAGCCGGT CGGCCTGAAG TCGTTCGCCA AGGCCTTCCC GGACCGGGTC
TTCGACGTCG GCATCGCCGA GCAGCACGCG GTCACCTCGG CCGCCGGCCT GGCCATGGGC
GGTCTCAAGC CCGTTGTGTG CATCTACGCG ACGTTCCTGA ACCGCGCCTT CGACCAGGTC
CTCATGGACG TCGCCATGCA CCGCCAGCCG GTGACCTTCG TGCTCGACCG CGCCGGGATC
ACCGGCGAGG ACGGCGCGTC CCACAACGGC ATGTGGGACA TGTCCTTCCT GCAGGTCGTG
CCGGGTCTGG CGATCGCCGC CCCGCGTGAC GCCGCGACCC TGCGCGCCGA GCTCGACGAG
GCGGTCTCCA ACACCGACGG CCCGACGGTC GTGCGTTACC CCAAGGGCAA GGTCGCCGCG
GACTCCCCGG CGATCGACCA GGTCGGCGGG GTCGACGTCC TCTACCGGGC GCCGGCGGCC
GCGCGGCACC GCGAGGTGCT GCTCGTCTCG ATCGGCGCGA TGGCCCCGAC CTGTCTGGAC
GTCGCCGAGC GTGTCGCCAG CCAGGGCATC GGCATCACCG TGGTCGACCC GCGGTGGGTC
AAGCCGCTCG ACCCGGCGCT GGTCGACCTC GCCCGTGACC ACGACCTCGT CGTCACCGTC
GAGGACAACG GGCGGGTCGG TGGCGTCGGT GCCTGCGTCG CGCAGCTGCT GCGGGACGCC
GACGTCGACG TCCCGGTGCG TGAGTTCGGG GTCGCCCAGC GCTTCCTCGA CCACGGCAAG
CGCGACGACG TGCTGGCCGA GGTCGGCCTC GCCCCGCAGG ACCTGGCCCG CAAGGTGATC
GAGGCGGTCG CCAAGCGCCA GCACGCCCTC ATGGGCGACG AGGTCGGCGC GGACGAGTCC
AACCAGACCC CCGCCGGCGG CGGTCAGGCC TGA
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| Protein sequence | MSLLSTIDSP QDVKRLDHEE LVTLAAEIRD FLIHAVARTG GHLGPNLGAV ELTLAIHRVF
DSPFDRVLWD TGHQSYVHKI LTGRREQFDR LRQRGGLSGY PSQAESEHDI IENSHASTAL
SYADGLSRAY ELRGENRAVV AVVGDGALTG GMCWEALNNI AASDRQVVIV VNDNGRSYSP
TIGGLADHLA SLRLAPEYEQ VLDVVKQVLG RTPLVGAPLF DALHGIKKGI KDVVTPQGMF
EDLGLKYVGP VDGHDVVAME SALRRAKDFG GPVIVHAMTR KGFGYPAAEQ DDADNFHAVG
VIDPVTGKPK SASKGTTWTS IFSEEIVRIG SERPDVVTMT AAMLQPVGLK SFAKAFPDRV
FDVGIAEQHA VTSAAGLAMG GLKPVVCIYA TFLNRAFDQV LMDVAMHRQP VTFVLDRAGI
TGEDGASHNG MWDMSFLQVV PGLAIAAPRD AATLRAELDE AVSNTDGPTV VRYPKGKVAA
DSPAIDQVGG VDVLYRAPAA ARHREVLLVS IGAMAPTCLD VAERVASQGI GITVVDPRWV
KPLDPALVDL ARDHDLVVTV EDNGRVGGVG ACVAQLLRDA DVDVPVREFG VAQRFLDHGK
RDDVLAEVGL APQDLARKVI EAVAKRQHAL MGDEVGADES NQTPAGGGQA
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