More than 300 homologs were found in PanDaTox collection
for query gene Franean1_5184 on replicon NC_009921
Organism: Frankia sp. EAN1pec



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012803  Mlut_13030  1-deoxy-D-xylulose-5-phosphate synthase  58.65 
 
 
671 aa  705    Micrococcus luteus NCTC 2665  Bacteria  normal  0.272368  n/a   
 
 
-
 
NC_014151  Cfla_1720  deoxyxylulose-5-phosphate synthase  63.54 
 
 
625 aa  770    Cellulomonas flavigena DSM 20109  Bacteria  normal  normal  0.201634 
 
 
-
 
NC_013093  Amir_1524  1-deoxy-D-xylulose-5-phosphate synthase  65.34 
 
 
633 aa  822    Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_1578  deoxyxylulose-5-phosphate synthase  64.29 
 
 
643 aa  770    Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0134437  normal  0.0458084 
 
 
-
 
NC_014165  Tbis_2270  deoxyxylulose-5-phosphate synthase  66.61 
 
 
637 aa  845    Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0482315 
 
 
-
 
NC_007333  Tfu_1917  1-deoxy-D-xylulose-5-phosphate synthase  67.92 
 
 
637 aa  877    Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_3751  deoxyxylulose-5-phosphate synthase  61.39 
 
 
667 aa  741    Nakamurella multipartita DSM 44233  Bacteria  normal  0.209396  normal  0.0527703 
 
 
-
 
NC_013947  Snas_1995  deoxyxylulose-5-phosphate synthase  56.82 
 
 
593 aa  645    Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.57499  normal  0.632922 
 
 
-
 
NC_013757  Gobs_1883  deoxyxylulose-5-phosphate synthase  67.68 
 
 
638 aa  835    Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.7109  n/a   
 
 
-
 
NC_013131  Caci_6415  Transketolase central region  54.68 
 
 
685 aa  652    Catenulispora acidiphila DSM 44928  Bacteria  normal  0.12568  normal  0.0992343 
 
 
-
 
NC_013947  Snas_4523  deoxyxylulose-5-phosphate synthase  62.5 
 
 
644 aa  799    Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.538152 
 
 
-
 
NC_013174  Jden_1399  deoxyxylulose-5-phosphate synthase  57.66 
 
 
638 aa  709    Jonesia denitrificans DSM 20603  Bacteria  normal  0.16518  normal  0.823779 
 
 
-
 
NC_013521  Sked_16320  1-deoxy-D-xylulose-5-phosphate synthase  61.23 
 
 
630 aa  735    Sanguibacter keddieii DSM 10542  Bacteria  normal  0.795724  normal 
 
 
-
 
NC_013510  Tcur_1755  deoxyxylulose-5-phosphate synthase  67.84 
 
 
639 aa  859    Thermomonospora curvata DSM 43183  Bacteria  normal  0.228145  n/a   
 
 
-
 
NC_007777  Francci3_1326  1-deoxy-D-xylulose-5-phosphate synthase  88.08 
 
 
655 aa  1148    Frankia sp. CcI3  Bacteria  normal  0.0578519  normal  0.326847 
 
 
-
 
NC_011886  Achl_1638  1-deoxy-D-xylulose-5-phosphate synthase  60.51 
 
 
657 aa  736    Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00000600934 
 
 
-
 
NC_009077  Mjls_2197  1-deoxy-D-xylulose-5-phosphate synthase  59.91 
 
 
638 aa  758    Mycobacterium sp. JLS  Bacteria  normal  normal  0.0669164 
 
 
-
 
NC_009664  Krad_1452  1-deoxy-D-xylulose-5-phosphate synthase  59.17 
 
 
647 aa  701    Kineococcus radiotolerans SRS30216  Bacteria  normal  0.944256  normal  0.128941 
 
 
-
 
NC_013159  Svir_24150  1-deoxy-D-xylulose-5-phosphate synthase  65.09 
 
 
645 aa  822    Saccharomonospora viridis DSM 43017  Bacteria  decreased coverage  0.00848147  normal  0.0118105 
 
 
-
 
NC_013131  Caci_1790  1-deoxy-D-xylulose-5-phosphate synthase  64.37 
 
 
669 aa  808    Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_2208  1-deoxy-D-xylulose-5-phosphate synthase  60.28 
 
 
638 aa  759    Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_3923  1-deoxy-D-xylulose-5-phosphate synthase  61.8 
 
 
637 aa  764    Mycobacterium gilvum PYR-GCK  Bacteria  hitchhiker  0.00988598  normal  0.567804 
 
 
-
 
NC_013169  Ksed_15720  1-deoxy-D-xylulose-5-phosphate synthase  56.73 
 
 
618 aa  676    Kytococcus sedentarius DSM 20547  Bacteria  normal  0.663127  normal 
 
 
-
 
NC_013441  Gbro_2260  deoxyxylulose-5-phosphate synthase  60.92 
 
 
682 aa  735    Gordonia bronchialis DSM 43247  Bacteria  normal  0.560033  n/a   
 
 
-
 
NC_014158  Tpau_1889  deoxyxylulose-5-phosphate synthase  62.86 
 
 
648 aa  768    Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.403398  n/a   
 
 
-
 
NC_009921  Franean1_5184  1-deoxy-D-xylulose-5-phosphate synthase  100 
 
 
650 aa  1309    Frankia sp. EAN1pec  Bacteria  normal  0.525192  normal 
 
 
-
 
NC_014210  Ndas_2848  deoxyxylulose-5-phosphate synthase  64.43 
 
 
642 aa  821    Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_1645  1-deoxy-D-xylulose-5-phosphate synthase  59.56 
 
 
657 aa  730    Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_1393  1-deoxy-D-xylulose-5-phosphate synthase  66.93 
 
 
633 aa  849    Acidothermus cellulolyticus 11B  Bacteria  normal  0.440641  normal 
 
 
-
 
NC_009953  Sare_1454  1-deoxy-D-xylulose-5-phosphate synthase  66.93 
 
 
660 aa  837    Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0111876 
 
 
-
 
NC_009380  Strop_1489  1-deoxy-D-xylulose-5-phosphate synthase  65.92 
 
 
677 aa  833    Salinispora tropica CNB-440  Bacteria  normal  0.0395223  normal  0.661538 
 
 
-
 
NC_009565  TBFG_12697  1-deoxy-D-xylulose-5-phosphate synthase  61.96 
 
 
638 aa  774    Mycobacterium tuberculosis F11  Bacteria  normal  0.0245428  normal 
 
 
-
 
NC_008699  Noca_2859  1-deoxy-D-xylulose-5-phosphate synthase  63.83 
 
 
634 aa  795    Nocardioides sp. JS614  Bacteria  normal  0.73079  n/a   
 
 
-
 
NC_008705  Mkms_2254  1-deoxy-D-xylulose-5-phosphate synthase  60.28 
 
 
638 aa  759    Mycobacterium sp. KMS  Bacteria  normal  0.0256106  normal 
 
 
-
 
NC_008726  Mvan_2477  1-deoxy-D-xylulose-5-phosphate synthase  61.64 
 
 
637 aa  760    Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.705455 
 
 
-
 
NC_013530  Xcel_1898  deoxyxylulose-5-phosphate synthase  62.1 
 
 
626 aa  758    Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.856078  n/a   
 
 
-
 
NC_013595  Sros_3712  1-deoxy-D-xylulose-5-phosphate synthase  55.25 
 
 
647 aa  653    Streptosporangium roseum DSM 43021  Bacteria  normal  0.0181913  normal  0.527091 
 
 
-
 
NC_013595  Sros_6734  1-deoxy-D-xylulose-5-phosphate synthase  66.88 
 
 
639 aa  837    Streptosporangium roseum DSM 43021  Bacteria  normal  0.769024  normal  0.345052 
 
 
-
 
NC_012669  Bcav_1958  deoxyxylulose-5-phosphate synthase  60.61 
 
 
643 aa  731    Beutenbergia cavernae DSM 12333  Bacteria  normal  0.911058  hitchhiker  0.0000518152 
 
 
-
 
NC_013093  Amir_3800  Transketolase central region  52.96 
 
 
583 aa  610  1e-173  Actinosynnema mirum DSM 43827  Bacteria  normal  0.377539  n/a   
 
 
-
 
NC_013093  Amir_5020  Transketolase central region  51.05 
 
 
618 aa  569  1e-161  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0858701  n/a   
 
 
-
 
NC_010718  Nther_1694  1-Deoxy-D-xylulose-5-phosphate synthase  41.97 
 
 
631 aa  532  1e-150  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.134316  normal  0.0277937 
 
 
-
 
NC_009253  Dred_1078  deoxyxylulose-5-phosphate synthase  43.41 
 
 
635 aa  522  1e-147  Desulfotomaculum reducens MI-1  Bacteria  normal  0.0303047  n/a   
 
 
-
 
NC_009012  Cthe_0828  1-deoxy-D-xylulose-5-phosphate synthase  42.36 
 
 
627 aa  520  1e-146  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1398  deoxyxylulose-5-phosphate synthase  46.24 
 
 
629 aa  513  1e-144  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_1027  deoxyxylulose-5-phosphate synthase  44.11 
 
 
634 aa  509  1e-143  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_1540  1-deoxy-D-xylulose-5-phosphate synthase  41.29 
 
 
620 aa  511  1e-143  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.00810208  n/a   
 
 
-
 
NC_013216  Dtox_2584  deoxyxylulose-5-phosphate synthase  41.34 
 
 
633 aa  505  1e-141  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.931562  normal  0.224926 
 
 
-
 
NC_007947  Mfla_2133  1-deoxy-D-xylulose-5-phosphate synthase  42.9 
 
 
614 aa  504  1e-141  Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.000520629  normal 
 
 
-
 
NC_007644  Moth_1511  1-deoxy-D-xylulose-5-phosphate synthase  44.23 
 
 
640 aa  501  1e-140  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_011661  Dtur_1044  deoxyxylulose-5-phosphate synthase  42.22 
 
 
618 aa  501  1e-140  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.213907  n/a   
 
 
-
 
NC_011898  Ccel_1900  deoxyxylulose-5-phosphate synthase  40 
 
 
623 aa  496  1e-139  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.00488607  n/a   
 
 
-
 
NC_007908  Rfer_2875  1-deoxy-D-xylulose-5-phosphate synthase  43.29 
 
 
632 aa  492  9.999999999999999e-139  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_0582  deoxyxylulose-5-phosphate synthase  40.16 
 
 
638 aa  494  9.999999999999999e-139  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_2448  deoxyxylulose-5-phosphate synthase  42.51 
 
 
631 aa  495  9.999999999999999e-139  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_3488  deoxyxylulose-5-phosphate synthase  42.31 
 
 
631 aa  489  1e-137  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.0451312  n/a   
 
 
-
 
NC_013411  GYMC61_0251  1-deoxy-D-xylulose-5-phosphate synthase  42.18 
 
 
631 aa  490  1e-137  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011899  Hore_06530  deoxyxylulose-5-phosphate synthase  40.17 
 
 
636 aa  491  1e-137  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.0000000000553997  n/a   
 
 
-
 
NC_002939  GSU0686  1-deoxy-D-xylulose-5-phosphate synthase  41.56 
 
 
637 aa  488  1e-136  Geobacter sulfurreducens PCA  Bacteria  normal  0.351489  n/a   
 
 
-
 
NC_007404  Tbd_0879  1-deoxy-D-xylulose-5-phosphate synthase  44.98 
 
 
618 aa  488  1e-136  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.623076 
 
 
-
 
NC_013124  Afer_0479  deoxyxylulose-5-phosphate synthase  45.73 
 
 
635 aa  488  1e-136  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_0675  1-deoxy-D-xylulose-5-phosphate synthase  41.36 
 
 
633 aa  487  1e-136  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_2319  1-deoxy-D-xylulose-5-phosphate synthase  40.38 
 
 
630 aa  487  1e-136  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_2511  deoxyxylulose-5-phosphate synthase  40.58 
 
 
625 aa  483  1e-135  Clostridium phytofermentans ISDg  Bacteria  normal  0.465086  n/a   
 
 
-
 
NC_008261  CPF_2073  1-deoxy-D-xylulose-5-phosphate synthase  40.41 
 
 
619 aa  483  1e-135  Clostridium perfringens ATCC 13124  Bacteria  normal  0.763377  n/a   
 
 
-
 
NC_008262  CPR_1787  1-deoxy-D-xylulose-5-phosphate synthase  40.16 
 
 
619 aa  483  1e-135  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_1048  1-deoxy-D-xylulose-5-phosphate synthase  41.33 
 
 
622 aa  483  1e-135  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_6781  1-deoxy-D-xylulose-5-phosphate synthase  41.37 
 
 
653 aa  479  1e-134  Burkholderia phytofirmans PsJN  Bacteria  normal  0.772471  hitchhiker  0.0000939262 
 
 
-
 
NC_012034  Athe_1288  deoxyxylulose-5-phosphate synthase  38.02 
 
 
616 aa  479  1e-134  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.0593022  n/a   
 
 
-
 
NC_013552  DhcVS_652  1-deoxy-D-xylulose-5-phosphate synthase  40.79 
 
 
647 aa  480  1e-134  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_1571  1-deoxy-D-xylulose-5-phosphate synthase  41.92 
 
 
632 aa  480  1e-134  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_2015  1-deoxy-D-xylulose-5-phosphate synthase  41.8 
 
 
622 aa  481  1e-134  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0928222  hitchhiker  0.00382162 
 
 
-
 
CP001509  ECD_00368  1-deoxy-D-xylulose-5-phosphate synthase  40.48 
 
 
620 aa  477  1e-133  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_3189  deoxyxylulose-5-phosphate synthase  40.32 
 
 
620 aa  476  1e-133  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET0745  1-deoxy-D-xylulose-5-phosphate synthase  40.79 
 
 
647 aa  477  1e-133  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_3213  1-deoxy-D-xylulose-5-phosphate synthase  40.48 
 
 
620 aa  476  1e-133  Escherichia coli ATCC 8739  Bacteria  normal  hitchhiker  0.00000252771 
 
 
-
 
NC_010498  EcSMS35_0456  1-deoxy-D-xylulose-5-phosphate synthase  40.48 
 
 
620 aa  476  1e-133  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.927308 
 
 
-
 
NC_010623  Bphy_3948  1-deoxy-D-xylulose-5-phosphate synthase  41.05 
 
 
632 aa  477  1e-133  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E0341  1-deoxy-D-xylulose-5-phosphate synthase  40.48 
 
 
620 aa  476  1e-133  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A0882  1-deoxy-D-xylulose-5-phosphate synthase  41.27 
 
 
638 aa  477  1e-133  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_2242  1-deoxy-D-xylulose-5-phosphate synthase  42.16 
 
 
638 aa  476  1e-133  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.0315294 
 
 
-
 
NC_012856  Rpic12D_2033  1-deoxy-D-xylulose-5-phosphate synthase  42.65 
 
 
636 aa  476  1e-133  Ralstonia pickettii 12D  Bacteria  normal  0.720268  normal 
 
 
-
 
NC_011901  Tgr7_0832  1-deoxy-D-xylulose-5-phosphate synthase  43.3 
 
 
640 aa  478  1e-133  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.111285  n/a   
 
 
-
 
NC_007614  Nmul_A0236  1-deoxy-D-xylulose-5-phosphate synthase  42.23 
 
 
614 aa  477  1e-133  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.947213  n/a   
 
 
-
 
NC_007952  Bxe_B2827  1-deoxy-D-xylulose-5-phosphate synthase  40.78 
 
 
635 aa  477  1e-133  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_3648  1-deoxy-D-xylulose-5-phosphate synthase  41.28 
 
 
634 aa  476  1e-133  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_2615  1-deoxy-D-xylulose-5-phosphate synthase  42 
 
 
637 aa  476  1e-133  Cupriavidus metallidurans CH34  Bacteria  normal  0.0207867  normal  0.922526 
 
 
-
 
NC_009800  EcHS_A0491  1-deoxy-D-xylulose-5-phosphate synthase  40.48 
 
 
620 aa  476  1e-133  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_00372  hypothetical protein  40.48 
 
 
620 aa  477  1e-133  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_3373  deoxyxylulose-5-phosphate synthase  42.97 
 
 
639 aa  476  1e-133  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_009801  EcE24377A_0451  1-deoxy-D-xylulose-5-phosphate synthase  40.48 
 
 
620 aa  476  1e-133  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010531  Pnec_1422  deoxyxylulose-5-phosphate synthase  40.97 
 
 
633 aa  475  1e-132  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  0.205576  normal 
 
 
-
 
NC_003910  CPS_1088  1-deoxy-D-xylulose-5-phosphate synthase  39.55 
 
 
630 aa  473  1e-132  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_0503  1-deoxy-D-xylulose-5-phosphate synthase  40.32 
 
 
620 aa  475  1e-132  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_2426  1-deoxy-D-xylulose-5-phosphate synthase  42.16 
 
 
636 aa  473  1e-132  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_0883  1-deoxy-D-xylulose-5-phosphate synthase  39.31 
 
 
635 aa  473  1e-132  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000000207097 
 
 
-
 
NC_009436  Ent638_0887  1-deoxy-D-xylulose-5-phosphate synthase  40.26 
 
 
620 aa  472  1e-132  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_4486  1-deoxy-D-xylulose-5-phosphate synthase  41.28 
 
 
646 aa  475  1e-132  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2235  1-deoxy-D-xylulose-5-phosphate synthase  40.49 
 
 
622 aa  475  1e-132  Geobacter lovleyi SZ  Bacteria  normal  0.77755  n/a   
 
 
-
 
NC_010086  Bmul_4820  1-deoxy-D-xylulose-5-phosphate synthase  40.96 
 
 
646 aa  473  1e-132  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
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