| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5122 |
|---|
| Symbol | |
|---|
| ID | 5673456 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 6136325 |
|---|
| End bp | 6137158 |
|---|
| Gene Length | 834 bp |
|---|
| Protein Length | 277 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 77% |
|---|
| IMG OID | 641243972 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001509386 |
|---|
| Protein GI | 158316878 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2324] Predicted membrane protein |
|---|
| TIGRFAM ID | [TIGR03460] carotene biosynthesis associated membrane protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0730862 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0692288 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCTGCCCT GGCTCGCCAC CGCGGTGGCC GTCGCGCTCC AGATCACCTA TCCGCTGACC
TCCGGGGACA GGCGGGCGGC CGTTACGGTG CTGTCGGTCC TGGCCTTCCT CGCGGCAGCG
GTGAGCCATG CGGCCGCCGT CCACGGGCCC GCGTGGGCCG CGGTCGCGAC GGCGCTGGCC
GCCGGCACCG GCCTGCTGGC CGAGTCGGTC GGCCTGCGTA CCGGCTGGCC GTTCGGCCAC
TACGCGTACG GCTCCGCGCT CGGCCCCGAT GTGGCCCGCG TCCCGGTCGT CGTGCCGCTG
GCCTGGGCGA TGATGGGCCT GCCAGCGCTG GTGCTCGGCC GCCGCTGCGC CCGCTCGCTG
GTGCGGGCAC CGACCGCGCG CTGGGCAGTG ACAGCCTGGG CAGTGACAGC GCTGGTCGGC
GGCGCCACGC TCACCGCCTG GGATCTGTTC CTCGACCCGC AGATGGTCGC CGAGGGCTAC
TGGGCGTGGT CCTCCGGCGG TCCCGCGCTC AACGGCATCC CGCTCAGCAA CGCGGCCGGA
TGGCTGCTCG TCGGCACGCT GCTCACCGGC GCGCTGGCCG CCCTGCCCGC CACCGTCCGG
ACCGCCACCG CCGCGCCCTC CGCCGACCGG GTGCCGATGG CCCTGCTTGG CTGGACCTGC
GCCTCGTCGG TGCTGGCCAA CCTCGCCTTC TTCGGCCGTC CCGGGGTGGC GCTCGCCGGC
GGTGCCGCGA TGGGCTCACT GCTCGGCCTC GCCGTGCTGC TCGGCCACCG CGACGCGGCC
CGCGGGTGGG CCGGCACCGC CCGCGAACGG GACCTGGCAC GCTCTGAGCT GTGA
|
|---|
| Protein sequence | MLPWLATAVA VALQITYPLT SGDRRAAVTV LSVLAFLAAA VSHAAAVHGP AWAAVATALA
AGTGLLAESV GLRTGWPFGH YAYGSALGPD VARVPVVVPL AWAMMGLPAL VLGRRCARSL
VRAPTARWAV TAWAVTALVG GATLTAWDLF LDPQMVAEGY WAWSSGGPAL NGIPLSNAAG
WLLVGTLLTG ALAALPATVR TATAAPSADR VPMALLGWTC ASSVLANLAF FGRPGVALAG
GAAMGSLLGL AVLLGHRDAA RGWAGTARER DLARSEL
|
|---|
| |