| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5092 |
|---|
| Symbol | |
|---|
| ID | 5673427 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 6094379 |
|---|
| End bp | 6095338 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641243943 |
|---|
| Product | PLP-binding domain-containing protein |
|---|
| Protein accession | YP_001509357 |
|---|
| Protein GI | 158316849 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0325] Predicted enzyme with a TIM-barrel fold |
|---|
| TIGRFAM ID | [TIGR00044] pyridoxal phosphate enzyme, YggS family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.340872 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00296969 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGGCC TCGAGCGCGA GGTGGACCCG CGCCGGCTGG CCGAGTTGCG CGAGCGGCTG
ACAGTCGTCC GTGACCGGAT CACCGTGGCG GCCCGGGACG CCGGCCGCGA CCCGGCGGAG
CTGACCCTGA TCGCCGTCAG CAAGACCCGA CCCGCCGAGG ACGTCCTCGC GCTGGTCGCG
CTGGGTGTCC GCCACTTCGC CGAGAACCGC GAGCAGGAGG CCGGGCCGAA GACCGAGGCC
GTCCGGCTGG CGCTGGCCGC CGCCGCGGCG GGCGGCTCGG ATGAGCACAC GATGTGGTCC
GATGATGACC GTTTCCGGGA ATCGAGTCCG TTGGCCGACA CGTCGGGGGC ATGGCGTCCA
TCACGTGTGG ATCAGGGTCC GACCCTCGGG CCGGCCGCCG GGCCCGATGT GCCGGTCTGG
CATTTCGTCG GCCAGCTCCA GCGCAACAAG GCCCGGGCCG TGGCGGGCTG GGTGCACTGC
GTGCAGTCGG TGGACCGAGC GCGACTGGTC GAAGCCCTTT CCCGGGCAGC AACGGCACGT
GGTCGTCAGA TTTCAGTGTG CATACAGGTC AATCTGGACA TTGCGGAGCC AGTCGGTGCA
CCGGGTGCGC CCGCGGCGCG AAATGCCCTG TCTACCAGGG AAAACGAGCC CACCGCCGGG
GCTGCGGACG GCGCTCGCGG CGGGGCCCTG CCCGCGGACG TACCGGCGCT CGCCGAGCTC
GTCGCGGGCT CCGAAGGGCT TGTTCTGACG GGTGTGATGG CTGTCGCGCC ACGCGGAGCA
CCCGCCAGGC CGGCCTTCGC TCGACTCCGT GAGGTAGCCG ACCGACTTCT TTCCGAACAT
CCCGCGGCGA CGCTAGTCAG TGCAGGGATG TCCGGCGATC TCGAGGACGC GGTCGCGGAG
GGCGCGACAC ACCTTCGGAT CGGCACCGCT TTGTTCGGTG AACGGCACGG TGTCCCTTAG
|
|---|
| Protein sequence | MSGLEREVDP RRLAELRERL TVVRDRITVA ARDAGRDPAE LTLIAVSKTR PAEDVLALVA
LGVRHFAENR EQEAGPKTEA VRLALAAAAA GGSDEHTMWS DDDRFRESSP LADTSGAWRP
SRVDQGPTLG PAAGPDVPVW HFVGQLQRNK ARAVAGWVHC VQSVDRARLV EALSRAATAR
GRQISVCIQV NLDIAEPVGA PGAPAARNAL STRENEPTAG AADGARGGAL PADVPALAEL
VAGSEGLVLT GVMAVAPRGA PARPAFARLR EVADRLLSEH PAATLVSAGM SGDLEDAVAE
GATHLRIGTA LFGERHGVP
|
|---|
| |